Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1o08
         (406 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024776-21|AAK68479.1|   65|Caenorhabditis elegans Ribosomal pr...    81   4e-16
AF040645-9|AAB94972.2|  197|Caenorhabditis elegans Hypothetical ...    30   0.73 
Z81129-4|CAB03405.1|  330|Caenorhabditis elegans Hypothetical pr...    29   0.96 
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p...    28   2.9  
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    28   2.9  
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    28   2.9  
Z81116-3|CAB03303.1|  346|Caenorhabditis elegans Hypothetical pr...    27   6.8  
U28929-1|AAN63410.1|  418|Caenorhabditis elegans Hypothetical pr...    27   6.8  
Z81513-6|CAB04176.1|  341|Caenorhabditis elegans Hypothetical pr...    26   9.0  
Z78546-7|CAB01772.1|  375|Caenorhabditis elegans Hypothetical pr...    26   9.0  
AL023830-4|CAA19474.1|  375|Caenorhabditis elegans Hypothetical ...    26   9.0  

>AC024776-21|AAK68479.1|   65|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 28 protein.
          Length = 65

 Score = 80.6 bits (190), Expect = 4e-16
 Identities = 41/54 (75%), Positives = 46/54 (85%), Gaps = 1/54 (1%)
 Frame = +3

Query: 69  MDKPNVLARVVKVLGRTGSQGQCTQVKVEFIG-ETSRQIIRNVKGPVRDGDILT 227
           MDK   LARV KV+GRTGSQGQCTQV+VEFI  + +R IIRNVKGPVR+GDILT
Sbjct: 1   MDKLT-LARVTKVIGRTGSQGQCTQVRVEFINDQNNRSIIRNVKGPVREGDILT 53


>AF040645-9|AAB94972.2|  197|Caenorhabditis elegans Hypothetical
           protein F52C6.3 protein.
          Length = 197

 Score = 29.9 bits (64), Expect = 0.73
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +1

Query: 169 PAVRSSET*KDPSVTETSSLFLNLNVKLGGCDRLLQHYCIRL 294
           P   S E  +DP   E+S +  NLNVK+    + L H  IR+
Sbjct: 64  PLRESEEVTEDPISVESSEVIGNLNVKVAETQQELHHEGIRI 105


>Z81129-4|CAB03405.1|  330|Caenorhabditis elegans Hypothetical
           protein T23F1.6 protein.
          Length = 330

 Score = 29.5 bits (63), Expect = 0.96
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 8   ETRQLWCTCVNCIKLDITSQNG*TQRSCSCRES 106
           ETRQ  C C   ++   + Q    Q SCSC+ S
Sbjct: 22  ETRQASCGCAQSVQPTCSCQQASQQYSCSCQPS 54


>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
            protein K07E12.1b protein.
          Length = 12268

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -2

Query: 141  EYTGPENQYGQALSRHEQERWVYP 70
            E TGPE+Q    LS++E+  WVYP
Sbjct: 8246 EPTGPEDQ---KLSKNEKGEWVYP 8266



 Score = 27.9 bits (59), Expect = 2.9
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -2

Query: 141  EYTGPENQYGQALSRHEQERWVYP 70
            E TGPE+Q    LS++E+  WVYP
Sbjct: 9290 EPTGPEDQ---KLSKNEKGEWVYP 9310



 Score = 26.2 bits (55), Expect = 9.0
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 141  EYTGPENQYGQALSRHEQERWVYP 70
            E TGPE+Q    LS++++  WVYP
Sbjct: 6753 EPTGPEDQ---KLSKNKKGEWVYP 6773



 Score = 26.2 bits (55), Expect = 9.0
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 141  EYTGPENQYGQALSRHEQERWVYP 70
            E TGPE+Q    LS++++  WVYP
Sbjct: 7472 EPTGPEDQ---KLSKNKKGEWVYP 7492



 Score = 26.2 bits (55), Expect = 9.0
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 141   EYTGPENQYGQALSRHEQERWVYP 70
             E TGPE+Q    LS++++  WVYP
Sbjct: 10009 EPTGPEDQ---KLSKNKKGEWVYP 10029


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
            protein K07E12.1a protein.
          Length = 13100

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -2

Query: 141  EYTGPENQYGQALSRHEQERWVYP 70
            E TGPE+Q    LS++E+  WVYP
Sbjct: 8291 EPTGPEDQ---KLSKNEKGEWVYP 8311



 Score = 27.9 bits (59), Expect = 2.9
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -2

Query: 141  EYTGPENQYGQALSRHEQERWVYP 70
            E TGPE+Q    LS++E+  WVYP
Sbjct: 9335 EPTGPEDQ---KLSKNEKGEWVYP 9355



 Score = 26.2 bits (55), Expect = 9.0
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 141  EYTGPENQYGQALSRHEQERWVYP 70
            E TGPE+Q    LS++++  WVYP
Sbjct: 6798 EPTGPEDQ---KLSKNKKGEWVYP 6818



 Score = 26.2 bits (55), Expect = 9.0
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 141  EYTGPENQYGQALSRHEQERWVYP 70
            E TGPE+Q    LS++++  WVYP
Sbjct: 7517 EPTGPEDQ---KLSKNKKGEWVYP 7537



 Score = 26.2 bits (55), Expect = 9.0
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 141   EYTGPENQYGQALSRHEQERWVYP 70
             E TGPE+Q    LS++++  WVYP
Sbjct: 10054 EPTGPEDQ---KLSKNKKGEWVYP 10074


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
            protein.
          Length = 13100

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -2

Query: 141  EYTGPENQYGQALSRHEQERWVYP 70
            E TGPE+Q    LS++E+  WVYP
Sbjct: 8291 EPTGPEDQ---KLSKNEKGEWVYP 8311



 Score = 27.9 bits (59), Expect = 2.9
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -2

Query: 141  EYTGPENQYGQALSRHEQERWVYP 70
            E TGPE+Q    LS++E+  WVYP
Sbjct: 9335 EPTGPEDQ---KLSKNEKGEWVYP 9355



 Score = 26.2 bits (55), Expect = 9.0
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 141  EYTGPENQYGQALSRHEQERWVYP 70
            E TGPE+Q    LS++++  WVYP
Sbjct: 6798 EPTGPEDQ---KLSKNKKGEWVYP 6818



 Score = 26.2 bits (55), Expect = 9.0
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 141  EYTGPENQYGQALSRHEQERWVYP 70
            E TGPE+Q    LS++++  WVYP
Sbjct: 7517 EPTGPEDQ---KLSKNKKGEWVYP 7537



 Score = 26.2 bits (55), Expect = 9.0
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 141   EYTGPENQYGQALSRHEQERWVYP 70
             E TGPE+Q    LS++++  WVYP
Sbjct: 10054 EPTGPEDQ---KLSKNKKGEWVYP 10074


>Z81116-3|CAB03303.1|  346|Caenorhabditis elegans Hypothetical
           protein T06C12.3 protein.
          Length = 346

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 399 FMLCIYSELNTIKWSSLTVL*V*HINLCRWY 307
           + L +YSE N I+W  L+++    I LC  Y
Sbjct: 180 YTLALYSESNVIQWEILSLIIAAGIVLCFQY 210


>U28929-1|AAN63410.1|  418|Caenorhabditis elegans Hypothetical
           protein F09C12.2 protein.
          Length = 418

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +3

Query: 141 QVKVEFIGETSRQIIRNVKGP-VRD 212
           Q+ +E++G    Q+IR +K P +RD
Sbjct: 267 QLLIEYLGTPDEQVIRRIKSPSIRD 291


>Z81513-6|CAB04176.1|  341|Caenorhabditis elegans Hypothetical
           protein F26D2.7 protein.
          Length = 341

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -2

Query: 399 FMLCIYSELNTIKWSSLTVL*V*HINLCRWY 307
           F++  Y+E NTI+W +L++L    I +C  Y
Sbjct: 180 FIMMPYNENNTIQWKALSLLISAGILICFQY 210


>Z78546-7|CAB01772.1|  375|Caenorhabditis elegans Hypothetical
           protein T21H8.4 protein.
          Length = 375

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +1

Query: 220 SSLFLNLNVKLGGCDRLLQ-HYCIRLR 297
           ++ FLNL +K   CD LL+ ++C ++R
Sbjct: 74  TNFFLNLMIKPSPCDLLLKTYFCSKIR 100


>AL023830-4|CAA19474.1|  375|Caenorhabditis elegans Hypothetical
           protein T21H8.4 protein.
          Length = 375

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +1

Query: 220 SSLFLNLNVKLGGCDRLLQ-HYCIRLR 297
           ++ FLNL +K   CD LL+ ++C ++R
Sbjct: 74  TNFFLNLMIKPSPCDLLLKTYFCSKIR 100


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,040,760
Number of Sequences: 27780
Number of extensions: 163655
Number of successful extensions: 406
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)