Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc1o05
(751 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F12.02c |p23fy||translationally controlled tumor protein ho... 142 6e-35
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom... 29 0.54
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce... 27 3.8
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.0
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 26 5.0
SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch... 26 6.6
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ... 26 6.6
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co... 26 6.6
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce... 25 8.7
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 25 8.7
>SPAC1F12.02c |p23fy||translationally controlled tumor protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 168
Score = 142 bits (343), Expect = 6e-35
Identities = 78/164 (47%), Positives = 107/164 (65%), Gaps = 1/164 (0%)
Frame = +3
Query: 144 GDEMFSDTYKMKLVDEVIYEVTGRLVTRAQG-DIQIEGFNPSAEEADEGTDSAVESGVDI 320
GDE+ SD Y +K VD+++YE ++VT QG D+ I G NPSAE+A+E + E+ ++
Sbjct: 10 GDELVSDAYDLKEVDDIVYEADCQMVTVKQGGDVDI-GANPSAEDAEENAEEGTETVNNL 68
Query: 321 VLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFK 500
V + RL T +F DKKSY Y+K YMK + A+L+E P++V VF+ N +K IL FK
Sbjct: 69 VYSFRLSPT-SF-DKKSYMSYIKGYMKAIKARLQESNPERVPVFEKNAIGFVKKILANFK 126
Query: 501 ELQFFTGESMDCDGMVAMMEYRDFDGTQIPIMMFFKHGLEEEKF 632
+ F+ GESMD D MV +M YR+ DG P M+FFK GL EKF
Sbjct: 127 DYDFYIGESMDPDAMVVLMNYRE-DGI-TPYMIFFKDGLVSEKF 168
>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 355
Score = 29.5 bits (63), Expect = 0.54
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +3
Query: 312 VDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKT 458
+D V ++L+E F ++K T+YLK + L K + PD VE T
Sbjct: 89 IDEVSLNKLIEKVGFHNRK--TIYLKQMARILSEKFQGDIPDTVEDLMT 135
>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 262
Score = 26.6 bits (56), Expect = 3.8
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +3
Query: 219 VTRAQGDIQIEGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGD 362
+T G Q + F PS E +E TD+ ++ V ++ V F D
Sbjct: 6 LTEVWGKPQKDIFFPSGSEVEESTDAPIQRTVQPIVTGSSVLALKFAD 53
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 5.0
Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = -2
Query: 588 VFAYHQSLYIPSWQPC-HHN 532
V A+ Q L++P W PC HN
Sbjct: 336 VVAFTQGLFLPRWLPCIKHN 355
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -2
Query: 129 HFVENMITSDNVLIDLHFDGLEAIKNNKNRKNGF 28
H +++ T + LI + +E+IK KNR +GF
Sbjct: 506 HISDSLTTEELELILRQYGEIESIKYLKNRSSGF 539
>SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 425
Score = 25.8 bits (54), Expect = 6.6
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 16 LLR-REAVLSVFIIFNRLQSIKMKIYKDIITGNHIFYEMLLLILVM 150
LLR RE ++ F+ ++ MK Y+D++ H F++ + L VM
Sbjct: 154 LLRGREFMMKDLYTFDIDKASAMKTYEDVLQAYHTFFKEVGLPFVM 199
>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
Ste6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -1
Query: 664 ELLSYFLSNI*NFSSSRPCLKNIMIGICVPSKSLY 560
ELL+ NFS+ R CL+N ++ CVP +Y
Sbjct: 784 ELLNNLTEARKNFSNYRDCLENCVLP-CVPFLGVY 817
>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -3
Query: 332 VVQDYVNSALDGRVRALVSLFSRRIKTLDLDIT 234
V++D +NS LDG + + S R +T LD++
Sbjct: 341 VLEDQMNSLLDGSLYGICRPLSSRAQTSVLDLS 373
>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 481
Score = 25.4 bits (53), Expect = 8.7
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -3
Query: 512 ELKFLKPAEDVFHYFVHVCFKYFNLVR 432
+ FLKP ++ YF+ + +Y +L+R
Sbjct: 175 QFDFLKPNNALYPYFMRIVQQYTSLIR 201
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 583 KYQS*CFSNMV*KKRNSKC*IRNNSIIPK 669
+Y S CF N + K + K N+SI+PK
Sbjct: 763 QYHSFCFINNLFSKSSLKAISSNDSIVPK 791
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,018,752
Number of Sequences: 5004
Number of extensions: 62047
Number of successful extensions: 165
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -