Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1o04
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual    30   0.39 
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    28   1.2  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    28   1.6  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    26   6.4  
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    25   8.4  
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe...    25   8.4  

>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -1

Query: 563 RSLSPSARAWQNTYSALYNVHSSAKRLLTNFSLPIIVRIVLSHLT 429
           RSLS     W +  S +YN  SS + ++     P  VR+ L  LT
Sbjct: 343 RSLSNDGNHWGSLSSTIYNPSSSPRTIVYFEKFPWFVRVYLHTLT 387


>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
 Frame = +1

Query: 94  KKRQLAVPVGSVNSLTHTIT---STTVASVIPKNYQEKRQKICHIISSLRNTHLNFNKIQ 264
           K R + +  G VN LTH +    S    S +  N Q  + K   + +   N H NF KIQ
Sbjct: 215 KSRTVDILEGKVNELTHQLNMADSKYNESKVANNSQNNQIKT--LKAQNLNIHKNFQKIQ 272

Query: 265 S 267
           S
Sbjct: 273 S 273


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 356  HRRRRRQRTEILVVNRLLIGNTLEWSDVT 442
            H RR  +R    VVN   +GNT  ++ VT
Sbjct: 1264 HTRRNGERNRFSVVNGCFLGNTYAFASVT 1292


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +1

Query: 124 SVNSLTHTITSTTVASVIP 180
           S  + TH++TST + S++P
Sbjct: 53  STETSTHSVTSTNITSIVP 71


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 459 NCANCVVTSDHSKVFPMS 406
           NC NC+V  D   V P+S
Sbjct: 194 NCENCLVIDDELNVLPIS 211


>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 108 KLALFERSKLVATGT*ARVNRIHFDVF 28
           +LA  ER KL+         + HFDVF
Sbjct: 381 QLAFVERCKLIVNDALILAKKFHFDVF 407


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,920,272
Number of Sequences: 5004
Number of extensions: 57534
Number of successful extensions: 175
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)