Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc1o04
(731 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY043325-1|AAL10682.1| 1406|Homo sapiens CRB1 isoform II precurs... 31 5.6
AY043324-1|AAL10681.1| 1376|Homo sapiens CRB1 isoform I precurso... 31 5.6
AL513325-3|CAM17208.1| 1294|Homo sapiens crumbs homolog 1 (Droso... 31 5.6
AL513325-2|CAH72584.1| 1406|Homo sapiens crumbs homolog 1 (Droso... 31 5.6
AL139136-3|CAM21656.1| 1294|Homo sapiens crumbs homolog 1 (Droso... 31 5.6
AL139136-2|CAI15311.1| 1406|Homo sapiens crumbs homolog 1 (Droso... 31 5.6
AL136322-4|CAM23328.1| 1294|Homo sapiens crumbs homolog 1 (Droso... 31 5.6
AL136322-3|CAI16646.1| 1406|Homo sapiens crumbs homolog 1 (Droso... 31 5.6
AJ748821-1|CAG38658.1| 1294|Homo sapiens crumbs homologue 1 (alt... 31 5.6
AF154671-1|AAF01361.1| 1376|Homo sapiens CRB1 protein. 31 5.6
AB208923-1|BAD92160.1| 441|Homo sapiens crumbs homolog 1 isofor... 31 5.6
>AY043325-1|AAL10682.1| 1406|Homo sapiens CRB1 isoform II precursor
protein.
Length = 1406
Score = 30.7 bits (66), Expect = 5.6
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +3
Query: 48 CSHALMCQ*QPICSVQKAPACRAGRFCE 131
C H +C PI V PA AGRFCE
Sbjct: 119 CQHGGICHQDPIYPVCICPAGYAGRFCE 146
>AY043324-1|AAL10681.1| 1376|Homo sapiens CRB1 isoform I precursor
protein.
Length = 1376
Score = 30.7 bits (66), Expect = 5.6
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +3
Query: 48 CSHALMCQ*QPICSVQKAPACRAGRFCE 131
C H +C PI V PA AGRFCE
Sbjct: 119 CQHGGICHQDPIYPVCICPAGYAGRFCE 146
>AL513325-3|CAM17208.1| 1294|Homo sapiens crumbs homolog 1
(Drosophila) protein.
Length = 1294
Score = 30.7 bits (66), Expect = 5.6
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +3
Query: 48 CSHALMCQ*QPICSVQKAPACRAGRFCE 131
C H +C PI V PA AGRFCE
Sbjct: 119 CQHGGICHQDPIYPVCICPAGYAGRFCE 146
>AL513325-2|CAH72584.1| 1406|Homo sapiens crumbs homolog 1
(Drosophila) protein.
Length = 1406
Score = 30.7 bits (66), Expect = 5.6
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +3
Query: 48 CSHALMCQ*QPICSVQKAPACRAGRFCE 131
C H +C PI V PA AGRFCE
Sbjct: 119 CQHGGICHQDPIYPVCICPAGYAGRFCE 146
>AL139136-3|CAM21656.1| 1294|Homo sapiens crumbs homolog 1
(Drosophila) protein.
Length = 1294
Score = 30.7 bits (66), Expect = 5.6
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +3
Query: 48 CSHALMCQ*QPICSVQKAPACRAGRFCE 131
C H +C PI V PA AGRFCE
Sbjct: 119 CQHGGICHQDPIYPVCICPAGYAGRFCE 146
>AL139136-2|CAI15311.1| 1406|Homo sapiens crumbs homolog 1
(Drosophila) protein.
Length = 1406
Score = 30.7 bits (66), Expect = 5.6
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +3
Query: 48 CSHALMCQ*QPICSVQKAPACRAGRFCE 131
C H +C PI V PA AGRFCE
Sbjct: 119 CQHGGICHQDPIYPVCICPAGYAGRFCE 146
>AL136322-4|CAM23328.1| 1294|Homo sapiens crumbs homolog 1
(Drosophila) protein.
Length = 1294
Score = 30.7 bits (66), Expect = 5.6
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +3
Query: 48 CSHALMCQ*QPICSVQKAPACRAGRFCE 131
C H +C PI V PA AGRFCE
Sbjct: 119 CQHGGICHQDPIYPVCICPAGYAGRFCE 146
>AL136322-3|CAI16646.1| 1406|Homo sapiens crumbs homolog 1
(Drosophila) protein.
Length = 1406
Score = 30.7 bits (66), Expect = 5.6
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +3
Query: 48 CSHALMCQ*QPICSVQKAPACRAGRFCE 131
C H +C PI V PA AGRFCE
Sbjct: 119 CQHGGICHQDPIYPVCICPAGYAGRFCE 146
>AJ748821-1|CAG38658.1| 1294|Homo sapiens crumbs homologue 1
(alternative protein) protein.
Length = 1294
Score = 30.7 bits (66), Expect = 5.6
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +3
Query: 48 CSHALMCQ*QPICSVQKAPACRAGRFCE 131
C H +C PI V PA AGRFCE
Sbjct: 119 CQHGGICHQDPIYPVCICPAGYAGRFCE 146
>AF154671-1|AAF01361.1| 1376|Homo sapiens CRB1 protein.
Length = 1376
Score = 30.7 bits (66), Expect = 5.6
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +3
Query: 48 CSHALMCQ*QPICSVQKAPACRAGRFCE 131
C H +C PI V PA AGRFCE
Sbjct: 119 CQHGGICHQDPIYPVCICPAGYAGRFCE 146
>AB208923-1|BAD92160.1| 441|Homo sapiens crumbs homolog 1 isoform
II precursor variant protein.
Length = 441
Score = 30.7 bits (66), Expect = 5.6
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +3
Query: 48 CSHALMCQ*QPICSVQKAPACRAGRFCE 131
C H +C PI V PA AGRFCE
Sbjct: 144 CQHGGICHQDPIYPVCICPAGYAGRFCE 171
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,703,310
Number of Sequences: 237096
Number of extensions: 2004346
Number of successful extensions: 8751
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8751
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8679165170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -