Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1n16
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    33   0.055
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    29   0.51 
SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces pomb...    28   1.2  
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    28   1.6  
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar...    27   2.1  
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    27   2.1  
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    27   3.6  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    26   6.3  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    26   6.3  
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ...    26   6.3  
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    25   8.4  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    25   8.4  
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    25   8.4  
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch...    25   8.4  
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p...    25   8.4  

>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 32.7 bits (71), Expect = 0.055
 Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
 Frame = +1

Query: 253 SDNLKSFYEKSGSIENSIPNVIKAPAPRTIKKIDP-AAVGNNLKLASFLLPKTEPSKPYV 429
           ++++   Y  SGS+EN +P        + +   +P  AV N L   S    +TEP  P  
Sbjct: 90  ANSINQPYNYSGSLENLVPTPSAGTPSQFMDAQNPYGAVYNALSQFS----ETEPKMPSY 145

Query: 430 LNNVILKPSLPAVSNTRKINLQSTEQK 510
           +++     SLP   +++ ++ Q T QK
Sbjct: 146 MDDEEASDSLPLSLSSQSLSSQVTNQK 172


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
 Frame = +1

Query: 259  NLKSFYEKSGSIENSIPNVIKAPAPRTIKKIDPAAVGNNLKLASFL-LPKTEPSKPYVLN 435
            N K  ++K  S+ +SIP +  +PAP ++ +   ++V +     S + +   +P+KP  L 
Sbjct: 959  NTKQSFDKKSSLIDSIPAL--SPAPSSLAR---SSVSSQRSSTSIIPIKPNKPTKPDHLV 1013

Query: 436  NVILKPSLPAVSNTRKINLQSTEQKTPNTIP 528
               +KP LP  S +    + +    TP  +P
Sbjct: 1014 APRVKPLLPPRSGSSSSGVPA-PNLTPVNVP 1043


>SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 422 GLLGSVFGNRKLANFKLFPTAAGSIFLMVRGAGAFITF 309
           G+ G + GNR  A F+  P +  S  ++  G+GA I F
Sbjct: 31  GIAGWLIGNRYSAGFRRLPFSLKSWLVIGSGSGASIIF 68


>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
           Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 17/63 (26%), Positives = 35/63 (55%)
 Frame = +1

Query: 139 PEATIVDSSQLTPVYLINPNDSQANYIITLGDVEQKPISDNLKSFYEKSGSIENSIPNVI 318
           PEA  +D++ +T V  I+ ++   + ++ L    Q+ I  + +  YE+S  + +SIP ++
Sbjct: 698 PEADYLDAALMT-VMQIHLSEGPGDILVFL--TGQEEIDTSCEILYERSKMLGDSIPELV 754

Query: 319 KAP 327
             P
Sbjct: 755 ILP 757


>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
           Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 768

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 411 TKQTLCIEQCYIETELTCSFEYS*NKSTVYRTEDTKYH 524
           TKQ   +   + +   TC ++Y   ++ V+ TED K++
Sbjct: 396 TKQISEVLNTFDQAAFTCEYKYDGERAQVHFTEDGKFY 433


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = +1

Query: 259 NLKSFYEKSGSIENSIPNVIKAPAPRTIKKIDPA-AVGNNLKLASFLLPKTEPSKPYVLN 435
           N  S Y +       IP     P P+   K+    A G    +ASF  P ++ ++PY+ +
Sbjct: 18  NNASKYSELPIAYQEIPLQSLPPYPKVASKLKGVVAGGKENNIASFQKPSSKATRPYIPS 77

Query: 436 NVILKPSLP 462
              L  S+P
Sbjct: 78  YTRLTYSVP 86


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 25/110 (22%), Positives = 47/110 (42%)
 Frame = +1

Query: 289 SIENSIPNVIKAPAPRTIKKIDPAAVGNNLKLASFLLPKTEPSKPYVLNNVILKPSLPAV 468
           S+EN   N I AP P +++  + A VG     +  + P    ++  V+     + S+   
Sbjct: 533 SVENP-QNNISAPTPSSLQSSN-APVGLGEVESKSVPPTNMATERGVVGR---RASMSIA 587

Query: 469 SNTRKINLQSTEQKTPNTIPVFGIDRKIVKLKDGMLTRRNRVERALPKIK 618
            N R+++    E   PN      I  K + +K+ M     + +   PK++
Sbjct: 588 VNARRVSKPEKEHTNPNAEQGDVIPEKPMSIKERMNMLMTKTDYEKPKVE 637


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
 Frame = +1

Query: 322 APAPRTIKKIDPAAVGNNLKLAS--FLLPKTEPSKPYVLNNVILKPSLPAVSNTRKINLQ 495
           +P+ + + +++      N+ L++   L  K E S   V N V      P  ++    +  
Sbjct: 317 SPSKKPVSELEELHTAGNVNLSARRALFEKKESSTKNVENPVSHHLKSPVRTSFPPASTT 376

Query: 496 STEQKTPNTIPV 531
           +++Q +P+T+PV
Sbjct: 377 ASKQDSPSTVPV 388


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 31  YFFPLFSKDFNFIFIFVVVMCL 96
           +FF LF KDF   + F ++ CL
Sbjct: 379 WFFSLFIKDFRLDYAFRILDCL 400


>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
           Str2 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 15/61 (24%), Positives = 30/61 (49%)
 Frame = -2

Query: 578 VNMPSFNFTIFLSMPKTGMVFGVFCSVDCRFILRVFETAGKLGFNITLFNT*GLLGSVFG 399
           +N   +   + L +   GM  G+  ++  +  ++   +  KLG N+TL+ T   +G  FG
Sbjct: 439 INDNHYTRPLVLVLILAGMGGGLL-TLSAQIAVQSVSSHAKLGMNLTLYLTFSSVGGAFG 497

Query: 398 N 396
           +
Sbjct: 498 S 498


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1328

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/47 (21%), Positives = 25/47 (53%)
 Frame = +3

Query: 429 IEQCYIETELTCSFEYS*NKSTVYRTEDTKYHTSLWHRQEDCKVKRW 569
           + + Y+E+ +  S+ Y  + ST+ + +  +   S W R+   K++ +
Sbjct: 783 LREAYVESAMDESYMYLASNSTIEKRDLAEIEKSQWGRKCSHKIREY 829


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = -3

Query: 418 CLVQFLATESWLISNYSRRLLD 353
           C++++L    W +SN  +R++D
Sbjct: 637 CILRYLRATKWHVSNAKKRIVD 658


>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
 Frame = +1

Query: 481 KINLQSTEQKTPNTIPVFGIDRKIVK-LKDGMLTRRNRVERALPKIKPKENTSTIIPPTS 657
           KI     E+ T  T P     R   K  K+  +   N V+   PK+  KEN       TS
Sbjct: 127 KIRFSKIEKYTKETRPTVSEVRVSTKDKKEYSMNTSNLVQSNPPKVHDKENAFAEATGTS 186

Query: 658 KLTS 669
            L+S
Sbjct: 187 ILSS 190


>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 612 DKTQREYFNNYPADIETHISAIN 680
           D  QR  +NN+PA +E  ++ +N
Sbjct: 121 DINQRFTYNNHPASVENSLTNVN 143


>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 521

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/46 (23%), Positives = 22/46 (47%)
 Frame = +1

Query: 214 YIITLGDVEQKPISDNLKSFYEKSGSIENSIPNVIKAPAPRTIKKI 351
           +I   G  E++ +   L + YE+  + E      +K   PRT+ ++
Sbjct: 349 FITEEGSCEKEAMKTRLNAIYEEEPTTEEYEEEFLKTYVPRTLDEV 394


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,966,218
Number of Sequences: 5004
Number of extensions: 65921
Number of successful extensions: 201
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)