Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1n16
         (729 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0030 + 31161821-31161927,31163700-31163934,31164064-311648...    33   0.31 
09_02_0022 + 3065644-3065953,3066048-3067162,3067261-3067437,306...    31   0.94 
05_03_0460 - 14294931-14295110,14295200-14295234,14295358-142954...    29   3.8  
03_02_0162 + 6053144-6053365,6053474-6053548,6054477-6054623,605...    28   6.6  
02_04_0238 + 21186072-21186883,21187315-21189346                       28   6.6  

>03_06_0030 +
           31161821-31161927,31163700-31163934,31164064-31164826,
           31165816-31167650,31169294-31169424,31169993-31170075,
           31170426-31170680,31171125-31171220,31171695-31171775,
           31171811-31171968,31172434-31172534,31172614-31172629,
           31173390-31173439,31174558-31174588,31175156-31175305,
           31176135-31176173,31176288-31176410,31176496-31176552,
           31176837-31176911,31177003-31177107
          Length = 1496

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 27/126 (21%), Positives = 58/126 (46%), Gaps = 3/126 (2%)
 Frame = +1

Query: 106 NLFTKSTMNTLPEATIVDSS-QLTPVYLINPNDSQANYIITLGDVEQKPISDNLKSFYEK 282
           N F  +      E  ++D   Q++ +++  P  S AN  +++  V+ +  S+N      +
Sbjct: 350 NFFAANAKTKQEEKQLIDKGKQVSSIHVFTPRYSDANPQMSMKGVDGRSASNNQFFHQGQ 409

Query: 283 SGSIENSIPNVIKAPAPRTIKKIDPAAVGNNLKLA-SFLLPKTE-PSKPYVLNNVILKPS 456
           +GSI     + ++APA     ++D +   +   LA    +P+ + PS    + +  + P 
Sbjct: 410 NGSIGWFARSPLEAPAINNFPRLDRSHNSSLGALAPPMSIPRIDHPSGASPIGSCTVDPR 469

Query: 457 LPAVSN 474
             A++N
Sbjct: 470 SSAINN 475


>09_02_0022 + 3065644-3065953,3066048-3067162,3067261-3067437,
            3067535-3067648,3068614-3068718,3068930-3069064,
            3069148-3069203,3069277-3069382,3069515-3069631,
            3069705-3069831,3069915-3070141,3070164-3070727
          Length = 1050

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 3/100 (3%)
 Frame = +1

Query: 226  LGDVEQKPISDNLKSFYEKSGSIENSIPNVIKAPAPRTIKKIDPAAV---GNNLKLASFL 396
            L  V+ K +  N       SG   NS  N   +PA  T + + PA V   GN+LKL +  
Sbjct: 857  LSYVQLKEMMLNNAKIANTSGVFSNSNTNYSPSPALST-QAVPPAKVVQNGNSLKLPT-- 913

Query: 397  LPKTEPSKPYVLNNVILKPSLPAVSNTRKINLQSTEQKTP 516
            LPK  P+          K  +    N ++I+ + +  +TP
Sbjct: 914  LPKLNPAAQRSNPTESNKAEVEQADNLKEISTKVSPAQTP 953


>05_03_0460 - 14294931-14295110,14295200-14295234,14295358-14295457,
            14295548-14295669,14296272-14296367,14296489-14298949
          Length = 997

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = -3

Query: 580  GSTCHLLT-LQSSCLCQRLVW 521
            G  CHL+T ++S CLCQ L W
Sbjct: 969  GIKCHLVTAMKSQCLCQILWW 989


>03_02_0162 +
           6053144-6053365,6053474-6053548,6054477-6054623,
           6054749-6055300,6055387-6055622,6055914-6056130
          Length = 482

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = -2

Query: 527 GMVFGVFCSVDCRFILRVFETAGKLGFNITLFNT*GL--LGSVFGNRKLANFKLFPTAAG 354
           G+  G   +++C   +RV +  G     +T+    G+  L   F ++ LAN  L PTA G
Sbjct: 418 GLFVGSSSAMNCVGAVRVAQDLGPGHTIVTILCDSGMRHLSKFFNDQYLANHGLTPTATG 477

Query: 353 SIFL 342
             FL
Sbjct: 478 LEFL 481


>02_04_0238 + 21186072-21186883,21187315-21189346
          Length = 947

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
 Frame = +1

Query: 244 KPISDNLKS---FYEKSGSIENSIPNVIKAPAPRTIKKID--PAAVGNNLKLASFLLPKT 408
           KP+ DN  S   F+++    E+S+P+ +K  A + +KK    P A+   + +AS L  K 
Sbjct: 326 KPL-DNTSSRRLFFKRICGSEDSLPSHVKGVAEKILKKCGGMPLAI---ISIASLLATKA 381

Query: 409 EPSKPYVLNNVILKPSL 459
           +  + +   N+ L+  L
Sbjct: 382 QTKEQWESVNISLESGL 398


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,565,849
Number of Sequences: 37544
Number of extensions: 356736
Number of successful extensions: 842
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)