Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1n16
         (729 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical pr...    30   1.5  
U50072-1|ABP49527.1|  378|Caenorhabditis elegans Hypothetical pr...    30   1.9  
U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z66495-3|CAA91270.2|  484|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AF067948-5|AAC17698.2|  243|Caenorhabditis elegans Hypothetical ...    29   2.6  
AF016654-4|AAB66023.1|  291|Caenorhabditis elegans Hypothetical ...    29   2.6  
Z72508-2|CAA96635.1|  284|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z72501-1|CAA96582.1|  584|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AL021483-1|CAA16348.1|  272|Caenorhabditis elegans Hypothetical ...    29   4.5  
Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ...    28   5.9  
AL117204-34|CAB55140.2|  348|Caenorhabditis elegans Hypothetical...    28   7.9  

>Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical
           protein ZK287.4 protein.
          Length = 1208

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 10/116 (8%)
 Frame = +1

Query: 145 ATIVD-SSQLTPVYLINPNDSQANYII-------TLGDVEQKPISDNLKSFYEKSGSIEN 300
           +T+VD SSQ    Y+ +P  + +N  +         G   Q P S    +    SGS E+
Sbjct: 548 STVVDTSSQFQIPYVSSPASATSNIFVGPIPPPSNSGSSSQAPDSSQSATNSSNSGSGES 607

Query: 301 SIPNVIKAPAPRTIKKIDPAAVG--NNLKLASFLLPKTEPSKPYVLNNVILKPSLP 462
            IPNV     P  + ++     G  +   + S    KTE S     + ++   S P
Sbjct: 608 KIPNVGPIAPPSQLSQVGVFVTGSTSTSPVVSINFIKTENSVQQPTHYIVPSQSSP 663


>U50072-1|ABP49527.1|  378|Caenorhabditis elegans Hypothetical
           protein K06B9.2 protein.
          Length = 378

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = +1

Query: 361 AVGNNLKLASFLLPKTEPSKPYVLNNVILKPSLPAVSNTRKINLQSTEQKTPNTIPVFG 537
           A+ N   +A+  +PK    K  ++ +V L   LP V    ++  +  EQKTP+   +FG
Sbjct: 164 AISNEADVATKCVPK---QKGELVGSVFLDRGLPRVVEYSELGAELAEQKTPDGKYLFG 219


>U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical protein
            C27F2.8 protein.
          Length = 1715

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 22/69 (31%), Positives = 30/69 (43%)
 Frame = +1

Query: 325  PAPRTIKKIDPAAVGNNLKLASFLLPKTEPSKPYVLNNVILKPSLPAVSNTRKINLQSTE 504
            PA +T     P   GNN +     +P      P     V  K S+P  +   K  ++ +E
Sbjct: 1296 PAKKTTPGPSPKPKGNNQRKKHVQVP------PVTKTPVTPKTSIPPPTEPEK-PIKPSE 1348

Query: 505  QKTPNTIPV 531
            QK PN IPV
Sbjct: 1349 QKKPNAIPV 1357


>Z66495-3|CAA91270.2|  484|Caenorhabditis elegans Hypothetical
           protein C36A4.4 protein.
          Length = 484

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = +1

Query: 361 AVGNNLKLASFLLPKTEPSKPYVLNNVILKPSLPAVSNTRKINLQSTEQKTPNTIPVFG 537
           A+ N   +A+  +PK    K  ++ +V L   LP V    ++  +  EQKTP+   +FG
Sbjct: 270 AISNEADVATKCVPK---QKGELVGSVCLDRGLPRVVEYSELGAELAEQKTPDGKYLFG 325


>AF067948-5|AAC17698.2|  243|Caenorhabditis elegans Hypothetical
           protein T27C4.1 protein.
          Length = 243

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
 Frame = +1

Query: 358 AAVGNNLKLASFLLPKTEPSKPYVL-----NNVILKPSLPAVSNTRKINLQSTEQKTPNT 522
           AA+    + A+F  P   P++P V      +NV    S P         +Q +E+K+P T
Sbjct: 173 AAMVGTTRFAAFASPDNSPNEPPVRVFPHSSNVAGMSSGPVPVMEEIAKVQPSEKKSPTT 232

Query: 523 IPVFGIDRKI 552
           +P   +D+++
Sbjct: 233 VPTDLLDQEV 242


>AF016654-4|AAB66023.1|  291|Caenorhabditis elegans Hypothetical
           protein C17A2.7 protein.
          Length = 291

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 417 AWFSFWQQKAG*FQIIPDGCWINLFDGTRR 328
           AW S +      F+  PD  W N+F+G RR
Sbjct: 45  AWHSCFMNNISHFEGYPDELWDNMFNGIRR 74


>Z72508-2|CAA96635.1|  284|Caenorhabditis elegans Hypothetical
           protein F28H7.2 protein.
          Length = 284

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +1

Query: 184 LINPNDSQANYIITLGDVEQKPISDNL-KSFYEKSGSIENSIPN 312
           L+     + N ++ +GD+ Q+ + +NL KS  +K G I+  + N
Sbjct: 50  LLGAGVPEGNVLVVVGDITQESVQENLIKSTLDKFGKIDILVNN 93


>Z72501-1|CAA96582.1|  584|Caenorhabditis elegans Hypothetical
           protein C04C11.2 protein.
          Length = 584

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 5/103 (4%)
 Frame = +1

Query: 220 ITLGDVEQKPISDNLKSFYEKSGSIENSIPN---VIKAPAPRTIKKIDPAAVGNNLKLAS 390
           I +G++  +  S+ L+SF      +E +       +  P   T     P   G N K AS
Sbjct: 333 IEIGELSTRDKSNTLESFVTGPQPVEEADEKGKIAVNGPFVYTPVYPYPQNAGTNGKAAS 392

Query: 391 FLLPKTEPSKPYVLNNVILKPSLPAVSNTRKINLQST--EQKT 513
             +  TEPS P+ +     +P    V+ TR I   S   E KT
Sbjct: 393 VTVISTEPSLPHSM----YEPEKTIVTTTRTIVTHSDGHESKT 431


>AL021483-1|CAA16348.1|  272|Caenorhabditis elegans Hypothetical
           protein Y38H8A.1 protein.
          Length = 272

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 5/109 (4%)
 Frame = +1

Query: 61  NFIFIFVVVMCLQ*YNLFTKSTMNTLPEATIVDSSQLTPVYL-----INPNDSQANYIIT 225
           +FI   +VVM L  + LF  + M T+P      S+QL  V L     +N  D  +++I  
Sbjct: 3   HFIHSVLVVMFLNSFVLFVAACMKTIPTEAASISAQLDNVPLRRMPVLNAQDDYSSHIQQ 62

Query: 226 LGDVEQKPISDNLKSFYEKSGSIENSIPNVIKAPAPRTIKKIDPAAVGN 372
               +  P         E   +++++  +   A A  T K +DP  + N
Sbjct: 63  FRQAKTFPSPQPT----EPLATVDSAAASA--ASASTTDKTVDPPRISN 105


>Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical protein
            C46C2.1b protein.
          Length = 1677

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
 Frame = +1

Query: 247  PISDNLKSFYEKSGSIEN---SIPNVIKAPAPR-TIKKIDPAAVGNNLKLASFLLPKTEP 414
            P+S +L S    S +  +   SI +    P  R T++ +  A  G +  +++   P  EP
Sbjct: 1187 PVSHSLSSNSSPSATTHSNMSSIQSTTSVPGRRFTVQPVSQAESGISSSIST---PHPEP 1243

Query: 415  SKPYVLNNVILKPSLPAVSNTRKINLQSTEQKTPN 519
            + P + +     PS+P V +   +NL+   ++TP+
Sbjct: 1244 T-PAITSCPPPVPSVPPVVSNGTLNLEVAPKQTPS 1277


>Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical protein
            C46C2.1a protein.
          Length = 1838

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
 Frame = +1

Query: 247  PISDNLKSFYEKSGSIEN---SIPNVIKAPAPR-TIKKIDPAAVGNNLKLASFLLPKTEP 414
            P+S +L S    S +  +   SI +    P  R T++ +  A  G +  +++   P  EP
Sbjct: 1187 PVSHSLSSNSSPSATTHSNMSSIQSTTSVPGRRFTVQPVSQAESGISSSIST---PHPEP 1243

Query: 415  SKPYVLNNVILKPSLPAVSNTRKINLQSTEQKTPN 519
            + P + +     PS+P V +   +NL+   ++TP+
Sbjct: 1244 T-PAITSCPPPVPSVPPVVSNGTLNLEVAPKQTPS 1277


>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
           protein Y40C5A.3 protein.
          Length = 2344

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +1

Query: 229 GDVEQKPISDNLKSFYEKSGSIENSIPNVIKAPAPRTIKK 348
           G+V+Q+ ++ + +     S S ENSI N+ K   P T+ K
Sbjct: 647 GEVDQEEVNPSERRPEISSISEENSIENISKTKTPTTVPK 686


>AL117204-34|CAB55140.2|  348|Caenorhabditis elegans Hypothetical
           protein Y116A8C.40 protein.
          Length = 348

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 528 WYGIWCLLFCRL*IYFTSI 472
           WYG W  + C +  YFT +
Sbjct: 134 WYGAWWAILCYIYFYFTDV 152


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,114,474
Number of Sequences: 27780
Number of extensions: 353554
Number of successful extensions: 1032
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)