Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1n08
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces ...    29   0.50 
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    27   3.5  
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    26   4.6  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    26   4.6  
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    26   4.6  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    26   4.6  
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    26   6.1  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    26   6.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   6.1  
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    25   8.1  
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    25   8.1  

>SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 318

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 21/67 (31%), Positives = 34/67 (50%)
 Frame = +2

Query: 176 VRVTTNPNGAVYLLYVNKSR*RRGARMQLITYAPRVPFKDGVIDLRLIFIGRLFSYPLTK 355
           V+ T +    + LL++N S  +  A +  +  AP V  +     +RLIF GR +   L  
Sbjct: 138 VKDTNDLKDRIRLLHLNSSS-KLNAFLHDLINAPNVSAEMKENCVRLIFFGRKYDPFLRS 196

Query: 356 RVFALTL 376
           R+F LT+
Sbjct: 197 RMFTLTI 203


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
 Frame = -3

Query: 468 HDNNIFFIMPSKTNAVIIYLFKLDTEHPPTYNV----NAKTRLVSGYENSRPIN 319
           HD  +F  +     A +IY+F   TE    Y V       T + + YE + P++
Sbjct: 769 HDKIVFLEVWKSIMAALIYVFSTATEDTVFYRVVNGIQQATEVAAAYELNEPVD 822


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +3

Query: 621 ASFDNGYSE-FCDKQQPNDYLN 683
           AS+D+   E +CDK  P DYLN
Sbjct: 348 ASYDSVDMETYCDKHTPPDYLN 369


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = -3

Query: 357  RLVSGYENSRPININLRSITPSLNGTRG 274
            RL+  YE S+PI I+L ++  S+N T+G
Sbjct: 984  RLLENYE-SKPICIDLLALDLSVNSTKG 1010


>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
 Frame = -3

Query: 708 HPAWD----CYNNSNSRWAVVYHKTLNSRCRTTLGTAS 607
           H  WD    C+  + +  +V Y KT N +   TLGT+S
Sbjct: 702 HLVWDDRVICFRVTMNENSVWYGKTCNPQLHITLGTSS 739


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = +2

Query: 35  DIIIKSLA*NLSGPLSVCASMPVTDLVLLASK---VLRTDKMCHTCSSACVRVTTNPNGA 205
           D II +L  N  G +++C   P+T++ L  +K   V++  K     + A   V      A
Sbjct: 104 DFIIDTLRNNEPGTITICTIGPLTNIALALNKAPEVIQRAKQIVMMAGAFSEVGNITPAA 163

Query: 206 VYLLYVN 226
            + +YV+
Sbjct: 164 EFNIYVD 170


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -3

Query: 348 SGYENSRPININLRSITPSLNG 283
           +G +  + I+INL  +TPSLNG
Sbjct: 333 TGAKYDQIIDINLSELTPSLNG 354


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 143 DKMCHTCSSACVRVTTNPNGAVY 211
           DK  +T SSA    TTNP+G+ +
Sbjct: 119 DKSKNTASSATGAATTNPSGSTF 141


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 558 QTTMTQINFNASYTSAPTPSRASF 629
           Q +  + +FNA+   APTPS A+F
Sbjct: 869 QPSYEEESFNATVIHAPTPSTATF 892


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 15/63 (23%), Positives = 28/63 (44%)
 Frame = -3

Query: 450 FIMPSKTNAVIIYLFKLDTEHPPTYNVNAKTRLVSGYENSRPININLRSITPSLNGTRGA 271
           F +P+  N   +Y+  + + +    + NA  R+ +G      +N+  RSI     G    
Sbjct: 349 FDLPAP-NKYALYVTNIKSGNSVGEDTNALVRIATGSAGEMYVNVETRSIQSENIGNVSL 407

Query: 270 YVI 262
           YV+
Sbjct: 408 YVL 410


>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
 Frame = -3

Query: 429 NAVIIYLFKLDTEHPPTYNVNAKTRLVSGYENSRP-ININLRSITPSLNGTRGAYVISCI 253
           + VIIY F    E+ P   V   T   S  E+  P I ++   I  ++    G  ++SC 
Sbjct: 92  STVIIYAFSQADENEPPQFVLVTTHKFSINESPYPIIAVSQSPIDKTIACGFGGGLVSCY 151

Query: 252 RAPRLYRDLFTYNKYTAPLGFVVT 181
               L R+    N Y+  LG  +T
Sbjct: 152 HGNPL-RERGIKNSYSHNLGEPIT 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,774,735
Number of Sequences: 5004
Number of extensions: 56107
Number of successful extensions: 164
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)