Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc1n07
(366 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1571 - 27935756-27935950,27936048-27936199,27936294-279364... 29 1.5
07_01_0162 + 1138420-1138640,1138788-1138830,1139449-1140971,114... 27 4.5
04_04_0447 - 25297351-25297575,25297663-25298370,25298824-252991... 27 6.0
02_05_0566 - 30017031-30017309,30018077-30018172,30018261-300183... 27 6.0
11_06_0235 + 21588212-21589029,21589426-21591358 26 7.9
09_04_0272 - 16278136-16278289,16278873-16278970,16279090-162792... 26 7.9
07_01_0733 + 5570084-5570282,5570395-5570600,5572484-5572624,557... 26 7.9
01_06_0564 - 30271749-30271759,30271847-30271922,30272878-302729... 26 7.9
>08_02_1571 -
27935756-27935950,27936048-27936199,27936294-27936403,
27936845-27937050,27937212-27937295,27937367-27937525,
27937621-27937728,27938103-27938278,27938376-27938462,
27938546-27938657,27938737-27938817,27938890-27938943,
27939107-27939183,27939262-27939331,27939552-27939666,
27939840-27939937,27940041-27940179,27940267-27940868,
27941270-27941399,27941471-27941529
Length = 937
Score = 28.7 bits (61), Expect = 1.5
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 207 EEEIKYMEIDDGEEIDTVKTFLRNSMSTAEQRDLYALAL 323
+ E+ + G++ID V TF + TA+QRDLY A+
Sbjct: 41 QREVAVTQTIAGKQIDRVFTFDKVFGPTAKQRDLYDQAI 79
>07_01_0162 +
1138420-1138640,1138788-1138830,1139449-1140971,
1141770-1142063,1142145-1142337,1142624-1142694,
1142781-1144200
Length = 1254
Score = 27.1 bits (57), Expect = 4.5
Identities = 15/81 (18%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Frame = +3
Query: 12 ESKHKRLTIYICNNFLIFTLKSARMIERTVTRWHLLSDNVLLK-------IGEVAQRLNY 170
E KR+ +Y +N + K+ + ++ +++ N+L+ +GE R++
Sbjct: 751 EFSRKRIAVYAVHNLQSYQFKALVSVSTSLVWAAVITKNILMSEVIASAVVGEAVSRIST 810
Query: 171 YLQEYANLEMQIEEEIKYMEI 233
+L + N + E+ ++ +E+
Sbjct: 811 FLIDNHNRKSSEEDGLERLEM 831
>04_04_0447 -
25297351-25297575,25297663-25298370,25298824-25299123,
25299876-25299927,25300530-25300673,25301002-25301258,
25301533-25301739,25301819-25301992,25302409-25302432,
25302610-25302677,25304607-25304665,25304802-25304877,
25304965-25305070,25305268-25305377,25305831-25305995,
25306571-25306656,25306893-25306957,25307280-25307330,
25309009-25309056,25309677-25309796,25310226-25310301,
25310780-25310877,25312149-25312404,25313117-25313238
Length = 1198
Score = 26.6 bits (56), Expect = 6.0
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +3
Query: 87 IERTVTRWHLLSDNVLLKIGEVAQRLNYYLQEYANL 194
+E +TR+H DN K+ E+ + L+ LQ+ N+
Sbjct: 717 VENALTRYHEACDNAKRKVLELLRGLSSELQDKINV 752
>02_05_0566 -
30017031-30017309,30018077-30018172,30018261-30018377,
30018538-30018667,30018866-30019029,30019480-30019485
Length = 263
Score = 26.6 bits (56), Expect = 6.0
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
Frame = +3
Query: 78 ARMIERTVTRWHLLSDNVLLK-------IGEVAQRLNYYLQEYANLEMQIEEE 215
+R+ + + RW + DN L+K G+V Q ++ LQ + EM++E E
Sbjct: 206 SRVGDMQIGRWFMTKDNALVKDSTVNVVSGKVKQEVHLKLQNVESGEMELELE 258
>11_06_0235 + 21588212-21589029,21589426-21591358
Length = 916
Score = 26.2 bits (55), Expect = 7.9
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 141 IGEVAQRLNYYLQEYANLEMQIEEEIKYMEID 236
IG + +L L E NL+ ++E IK+++I+
Sbjct: 8 IGTLLPKLGKLLSEEYNLQKNVKEGIKFLKIE 39
>09_04_0272 -
16278136-16278289,16278873-16278970,16279090-16279230,
16279701-16279865,16279941-16280117,16280330-16280510,
16280784-16280829,16281178-16281241,16281331-16281353,
16281964-16282036,16282410-16282541,16283343-16283429,
16283488-16283700
Length = 517
Score = 26.2 bits (55), Expect = 7.9
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 107 LAFIVG*CIIKNWRGRPTTKLLFARIRKL 193
+A + G C++ W+G PTT L+ + K+
Sbjct: 203 IALVCGNCVV--WKGAPTTPLITIAMTKI 229
>07_01_0733 + 5570084-5570282,5570395-5570600,5572484-5572624,
5572773-5572949,5573049-5573145,5573575-5573687,
5573774-5573896,5574004-5574075,5575340-5575432,
5575564-5575674,5575767-5575889,5576834-5576890,
5576939-5577022,5577140-5577214,5577418-5577554,
5577719-5577853,5579029-5579168,5579334-5579399,
5579732-5579838,5579910-5579990,5580064-5580138,
5580224-5580325,5581837-5582005,5582090-5582217,
5582596-5582679,5582779-5582879,5583729-5583882,
5583964-5584038,5584112-5584262,5584463-5585078,
5585427-5585487,5585874-5586019,5586104-5586287,
5586363-5586440,5586603-5586931,5587023-5587199,
5587571-5587667,5587742-5587897,5587962-5588198,
5588271-5588354,5588426-5588486,5588762-5588898
Length = 1912
Score = 26.2 bits (55), Expect = 7.9
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +3
Query: 207 EEEIKYMEIDDGEEIDTVKTFLRNSMSTAEQRDLYALALKLNSLINNI 350
E + K EI +G E+D K+ R +QR+L AL+ +L +I
Sbjct: 1566 ENDNKGQEIANGTEVDDKKSNKRLKEKARKQRELEISALEERALQRDI 1613
>01_06_0564 -
30271749-30271759,30271847-30271922,30272878-30272919,
30273065-30273206,30273278-30273339,30273460-30273526,
30273644-30273834
Length = 196
Score = 26.2 bits (55), Expect = 7.9
Identities = 9/34 (26%), Positives = 22/34 (64%)
Frame = +3
Query: 147 EVAQRLNYYLQEYANLEMQIEEEIKYMEIDDGEE 248
++ Q L++ ++ +E+++++M +DDGEE
Sbjct: 83 DIRQERRAELEKVGSMCDLLEKQLRFMTVDDGEE 116
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,249,704
Number of Sequences: 37544
Number of extensions: 143787
Number of successful extensions: 430
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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