Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1n04
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.02c |||conserved fungal protein|Schizosaccharomyces pom...    29   0.48 
SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces pom...    27   2.6  
SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch...    25   7.8  

>SPAC1782.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 161

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
 Frame = +3

Query: 411 SLIGGYVK-HPLI--QENMHQIVLSPIYFLILFGLYSVSVILFRVLTFN 548
           +LIG  ++  PLI  Q+N+  + LS + FLIL  +Y++S++    L F+
Sbjct: 37  ALIGASMEVKPLIVTQDNLSTLALSGLVFLILGMIYTISLLQSNFLFFS 85


>SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 373

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +3

Query: 453 NMHQIVLSPIYFLILFGLYSVSVILFRVLTFNNCE 557
           N   +VL  ++FL++FGLYS ++IL  +L  N  +
Sbjct: 12  NYFPLVLR-LFFLVVFGLYSFTLIL-HLLVINRVD 44


>SPCC126.14 |prp18||U5 snRNP-associated protein
           Prp18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 343

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 215 RLFGRSQEATSSGFVSVFNIFALSQILKNLKT 120
           RLFG S+EAT   + S+     L +I   L T
Sbjct: 141 RLFGESEEATIQRYYSLLKYKKLEEIENELLT 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,731,907
Number of Sequences: 5004
Number of extensions: 54659
Number of successful extensions: 122
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)