Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1n04
         (697 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0754 - 31515939-31515998,31516372-31516479,31516575-315166...    42   5e-04
02_05_0623 + 30446420-30446525,30446635-30446715,30446811-304469...    34   0.094
06_01_1040 + 8163654-8163704,8163814-8163935,8164011-8164092,816...    28   8.1  
03_06_0143 + 31962241-31962291,31962385-31962506,31962572-319626...    28   8.1  

>02_05_0754 -
           31515939-31515998,31516372-31516479,31516575-31516695,
           31517309-31517370
          Length = 116

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 18/51 (35%), Positives = 33/51 (64%)
 Frame = +3

Query: 471 LSPIYFLILFGLYSVSVILFRVLTFNNCEEAAKELQREIIEAKKDLHERGL 623
           L PIY ++  G Y + ++ F ++ F  C + A  LQ++I+EAK+ L ++G+
Sbjct: 61  LLPIYLVVALGCYGLFMVGFGLMFFPTCPQEAVLLQQDILEAKEFLSKKGV 111


>02_05_0623 +
           30446420-30446525,30446635-30446715,30446811-30446987,
           30447629-30447799,30448239-30448448,30448634-30448722,
           30449318-30450010
          Length = 508

 Score = 34.3 bits (75), Expect = 0.094
 Identities = 22/56 (39%), Positives = 31/56 (55%)
 Frame = -1

Query: 619 PLSCKSFLASIISLCNSFAASSQLLNVKTLKSMTLTEYKPKSIRKYMGDKTI*CMF 452
           P S  S+ A ++S   S AASS +  + +LKS T T    KS+ KY G  T+  +F
Sbjct: 27  PASASSYPAKVVSGFLSNAASSVMKRLWSLKSTTKTGSGGKSMVKYEGGYTVETVF 82


>06_01_1040 +
           8163654-8163704,8163814-8163935,8164011-8164092,
           8164166-8164213,8164516-8164671,8164747-8164843,
           8164942-8164984,8165375-8165442,8165533-8165617,
           8165698-8165746,8165968-8166040,8166119-8166179,
           8167114-8167180,8167400-8167453,8167537-8167665,
           8168192-8168255,8168366-8168439,8168523-8168576,
           8168696-8168764,8169394-8169483,8169656-8169763,
           8169876-8169923
          Length = 563

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/49 (26%), Positives = 27/49 (55%)
 Frame = -1

Query: 625 LKPLSCKSFLASIISLCNSFAASSQLLNVKTLKSMTLTEYKPKSIRKYM 479
           +K L  ++ L  ++S   +F  +  +LN +TLK   ++   P ++ K+M
Sbjct: 213 IKDLDPETTLVVVVS--KTFTTAETMLNARTLKEWIVSSLGPDAVAKHM 259


>03_06_0143 +
           31962241-31962291,31962385-31962506,31962572-31962671,
           31962775-31962822,31963096-31963251,31963330-31963426,
           31963525-31963567,31963970-31964037,31964139-31964223,
           31964297-31964345,31964566-31964638,31964708-31964768,
           31965417-31965483,31965709-31965762,31965854-31965982,
           31966485-31966548,31966655-31966728,31966793-31966867,
           31966972-31967040,31967759-31967848,31968014-31968121,
           31968251-31968298
          Length = 576

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/49 (26%), Positives = 27/49 (55%)
 Frame = -1

Query: 625 LKPLSCKSFLASIISLCNSFAASSQLLNVKTLKSMTLTEYKPKSIRKYM 479
           +K L  ++ L  ++S   +F  +  +LN +TLK   ++   P ++ K+M
Sbjct: 219 IKDLDPETTLVVVVS--KTFTTAETMLNARTLKEWIVSSLGPDAVAKHM 265


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,772,378
Number of Sequences: 37544
Number of extensions: 281447
Number of successful extensions: 539
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)