Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1n04
         (697 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70684-9|CAA94605.1|   95|Caenorhabditis elegans Hypothetical pr...    45   5e-05
AF106583-5|AAD03136.1|  301|Caenorhabditis elegans Hypothetical ...    30   1.4  
U64835-1|AAO25997.1|  335|Caenorhabditis elegans Serpentine rece...    29   2.4  
AF025471-5|AAB71064.2|  334|Caenorhabditis elegans Serpentine re...    29   2.4  
Z78017-2|CAD44160.1|  615|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z73976-10|CAD44151.1|  615|Caenorhabditis elegans Hypothetical p...    28   7.3  
Z73974-2|CAA98271.2|  713|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z50797-4|CAA90674.1|  339|Caenorhabditis elegans Hypothetical pr...    27   9.7  
U40800-10|AAA81495.2|  186|Caenorhabditis elegans Hypothetical p...    27   9.7  

>Z70684-9|CAA94605.1|   95|Caenorhabditis elegans Hypothetical
           protein F28D1.11 protein.
          Length = 95

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
 Frame = +3

Query: 444 IQENMHQIVLSPIYFLILF-GLYSVSVILFRVLTFNNCEEAAKELQREIIEAKKDLHER 617
           + E +H +V    +F +LF G+Y+V  +++ V TFN+C EA  EL  EI EA+++L  +
Sbjct: 33  LPECLHCLVNYAPFFAVLFLGIYAVFNVVYGVATFNDCAEAKVELLGEIKEAREELKRK 91


>AF106583-5|AAD03136.1|  301|Caenorhabditis elegans Hypothetical
           protein F23C8.8 protein.
          Length = 301

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +3

Query: 429 VKHPLIQENMHQIVLSPIYFLILFGLYSVSVILFRVLTFNNCEE--AAKELQREIIEAKK 602
           V+HP I   +     +P  F+I+   Y    +L  +L     +E   A  L R++IEA  
Sbjct: 79  VRHPHIARCLAITRPAPTKFVIISDYYERGTLLEWILQKKRLKEHPLAATLFRQLIEAIN 138

Query: 603 DLHERGL 623
            LH+RG+
Sbjct: 139 YLHKRGI 145


>U64835-1|AAO25997.1|  335|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 28 protein.
          Length = 335

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 27/110 (24%), Positives = 49/110 (44%)
 Frame = +3

Query: 219 ILNTYMYK*TNYVIENNVLNFGCSL**NLLEDQNNIKLENYATIRMTKLMEWISLCSAFF 398
           +LNT  ++ T+YV         C     LL+D + I    Y +    +L + +S   A  
Sbjct: 81  VLNTSFFRVTSYVRPV------CEFLVPLLKDPSYILTPFYTSYMYAQLAKMLSTL-AMS 133

Query: 399 AVWYSLIGGYVKHPLIQENMHQIVLSPIYFLILFGLYSVSVILFRVLTFN 548
              Y+ +   V+H +I        ++ I+ + LFG++ V++     L FN
Sbjct: 134 INRYTSVNNPVQHKMIWMKYSSKAIALIFIIPLFGVWPVAIGNTSFLPFN 183


>AF025471-5|AAB71064.2|  334|Caenorhabditis elegans Serpentine
           receptor, class h protein195 protein.
          Length = 334

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 22/84 (26%), Positives = 40/84 (47%)
 Frame = -2

Query: 453 FLVLMDV*RSLLLENTKRRKMLNRGISIPLVLSSL*WRNFQVLYCFDLQVGFITMNSRNL 274
           +++L D   SLL   T    ++N G   PL LS   + N   ++ F + + F T  + ++
Sbjct: 59  WILLFDYSLSLL---TAPFVLVNEGAGYPLGLSK--YTNVPEVFQFMIVIDFATNMAISI 113

Query: 273 KHYSQ*RSLSICTYRYSKY*TFWK 202
               + R   ICT+ +  +  FW+
Sbjct: 114 DSIFENRFYIICTFSWKHHWKFWR 137


>Z78017-2|CAD44160.1|  615|Caenorhabditis elegans Hypothetical
           protein T07C12.12 protein.
          Length = 615

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = -1

Query: 625 LKPLSCKSFLASIISLCNSFAASSQLLNVKTLKSMTLTEYKPKSIRKYMGDKT 467
           LK  +CK     ++   NSF    Q   +  +KS+ L+  K + ++  M   T
Sbjct: 184 LKRNNCKVLGGQVLPQLNSFVPVDQYARLLGIKSLNLSAKKKEEVKTTMNSNT 236


>Z73976-10|CAD44151.1|  615|Caenorhabditis elegans Hypothetical
           protein T07C12.12 protein.
          Length = 615

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = -1

Query: 625 LKPLSCKSFLASIISLCNSFAASSQLLNVKTLKSMTLTEYKPKSIRKYMGDKT 467
           LK  +CK     ++   NSF    Q   +  +KS+ L+  K + ++  M   T
Sbjct: 184 LKRNNCKVLGGQVLPQLNSFVPVDQYARLLGIKSLNLSAKKKEEVKTTMNSNT 236


>Z73974-2|CAA98271.2|  713|Caenorhabditis elegans Hypothetical
           protein F29F11.4 protein.
          Length = 713

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -2

Query: 177 LCFSFQHFCTFTDTKKFKNHRYYTLKPEETLNRQNKTIQTTSLLAF 40
           +CFS   FC + DT  F +  Y+ +    T+   +   +T  ++ F
Sbjct: 254 ICFSASMFCIWEDTWVFSSAVYFFIVSISTVGLGDMLFRTPDMMVF 299


>Z50797-4|CAA90674.1|  339|Caenorhabditis elegans Hypothetical
           protein T22H6.3 protein.
          Length = 339

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = -2

Query: 174 CFSFQHFCTFTDTKKFKNHRYYTLKPEETLNRQ 76
           CFS   FC F   K+ KN      K    LNRQ
Sbjct: 214 CFSIIIFCGFKSWKQMKNCTTQMSKKTRELNRQ 246


>U40800-10|AAA81495.2|  186|Caenorhabditis elegans Hypothetical
           protein D2096.2a protein.
          Length = 186

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +2

Query: 365 NGMDIPLFSIFRRLVFSNRRLR*TSINTRKHASNRLISH-IFSNTLWFI 508
           NG+++P F  F   +    R      N  K  +NR+IS+ ++  T +F+
Sbjct: 12  NGVEVPPFRNFHEFLLETDRYERPPFNDFKKWNNRIISNLLYFQTNYFV 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,912,805
Number of Sequences: 27780
Number of extensions: 295612
Number of successful extensions: 785
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)