Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1n01
         (708 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0307 - 16546692-16546791,16548107-16548336                       81   8e-16
03_01_0512 - 3849275-3849333,3849429-3849531,3849610-3849654,384...    28   8.4  

>07_03_0307 - 16546692-16546791,16548107-16548336
          Length = 109

 Score = 81.0 bits (191), Expect = 8e-16
 Identities = 36/67 (53%), Positives = 47/67 (70%), Gaps = 1/67 (1%)
 Frame = +1

Query: 259 EAGSGQINPCIRKDINKVVDFIDIEDITEKAS-LCRCWRSKNWPYCDGSHGPHNKETGDN 435
           EAG G INP IRK+  KVVD +   ++++  +  CRCWRS  +P CDGSH  HNK TGDN
Sbjct: 42  EAGVGGINPSIRKEEEKVVDTVLAGELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDN 101

Query: 436 TGPVVVR 456
            GP++V+
Sbjct: 102 VGPLLVK 108


>03_01_0512 -
           3849275-3849333,3849429-3849531,3849610-3849654,
           3849876-3849974,3850078-3850146,3850251-3850310,
           3850540-3850633,3850875-3850949,3851101-3851219,
           3851433-3851600,3852743-3852928
          Length = 358

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -1

Query: 183 PIFNSKTKPSANRIWNRQARQIVGN 109
           P FNSK   S+N I  RQA Q++G+
Sbjct: 237 PEFNSKLLSSSNYIIRRQATQLLGD 261


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,109,061
Number of Sequences: 37544
Number of extensions: 348463
Number of successful extensions: 749
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)