Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1m22
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb...    29   0.68 
SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|c...    28   1.2  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    28   1.6  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    28   1.6  
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    27   3.6  
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch...    26   4.8  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    26   4.8  
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom...    26   6.3  
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    25   8.3  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    25   8.3  
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce...    25   8.3  

>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +1

Query: 73  PHNLVEPQSDVGNKLIENLIVYVPTDDDRLYIDKKQFPKF--NSVLVYRHE 219
           P++L+EP   +   L   ++V    DD+++  D+K    F   S++ Y HE
Sbjct: 246 PNSLIEPLGKIIQVLKREVVVKSDIDDEKIVFDEKTVLCFEDRSIIGYIHE 296


>SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 588 GNVHHGEDIVVETHFLHLSISQTARAL 668
           GN+HH  D   ET  +HL+IS  A A+
Sbjct: 195 GNLHHAGDHEEETVHIHLTISLFASAI 221


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +1

Query: 31  FQIQVCISDRFFAFPHNLVEPQSDVGNKLIENLIVY 138
           F  ++ I D    FP NL++  S +    +EN + Y
Sbjct: 403 FSFRLSIHDNSICFPFNLIQELSSLQQLFVENALPY 438


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +1

Query: 73  PHNLVEPQSDVG-NKLIENLIVYVPTDDDRLYIDKKQFPKFNSVLVYRHEHDVNIDSRS 246
           P N +  QS V  NK  +++++     +D+    +   P  +SVL  +HE+ V ID ++
Sbjct: 499 PENAIALQSSVPENKAEDSVVLKSSVPEDK---SEDSVPSKSSVLEDKHENSVEIDKKA 554


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +1

Query: 97  SDVGNKLIENLIVYVPTDDDRLYIDK-KQFPKFNSV 201
           SDV + LI+ L+V  P   DRL +D+  Q P FN +
Sbjct: 336 SDVASDLIKKLLVLDP--KDRLTVDEIHQHPFFNGI 369


>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 747

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = -1

Query: 726 SQFNLLYKLSIFLVRQIDYIAR--GLFAILKDAKNAFQRQYL 607
           S FNL  KL    VRQI +  +  G   I+   KN F+   L
Sbjct: 348 SHFNLSEKLFALAVRQISHKTKRPGFDGIINSLKNIFEEDNL 389


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 499  SNLRPIACEIPLSHFKELVESNDFLLCFNLET 594
            +NL  + CEIP+  F+  VE +  LL F  ET
Sbjct: 920  ANLIELICEIPVCMFEPTVELSPILL-FQYET 950


>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 594

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 304 EIGAGETRVFSVLLTNNLFYCNTMIIQH 387
           E+   + R+FS  +   L YCNT+I  H
Sbjct: 439 ELDFEKQRLFSACIEVYLSYCNTLIFLH 466


>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +1

Query: 568 FLLCFNLETSTMVKILSLK-RIFCIF 642
           FLL F L T+  ++ILSL    FC+F
Sbjct: 23  FLLTFFLLTTCQLRILSLSINAFCVF 48


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +2

Query: 467 ATVKAFRLQ*KAICDRLLVKFRCLILKSWWKAMTFYYVSIWKRPPW 604
           +T+ AF L    + D +L+ F   +L SW      +++SI +  PW
Sbjct: 212 STIGAFDLDPNKVLDLILLLFSENLLDSW-----RFFLSILRNSPW 252


>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 813

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
 Frame = -1

Query: 660 GLFAILKDAKNAFQRQYLHHGG---RF-QIET**KVIAFHQLFKMRQRNFTSNRSQIAFY 493
           G+ A +   K     + L++GG    F  ++T   V+ +  L   RQR  T N + I+F 
Sbjct: 32  GIIAHIDAGKTTLTEKMLYYGGFTSHFGNVDTGDTVMDY--LPAERQRGITINSAAISFT 89

Query: 492 WRRNALTV 469
           WR   + +
Sbjct: 90  WRNQRINL 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,133,214
Number of Sequences: 5004
Number of extensions: 66393
Number of successful extensions: 170
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)