Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1m19
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr...    27   1.8  
SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1 |Schizos...    27   3.2  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    27   3.2  
SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   5.6  
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr...    26   5.6  
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ...    25   7.5  

>SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 311

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 379 PFFGPQTANSHAFYPKASPPWRLSIAL 299
           PF+  QTA+S  F+   SP  R  IAL
Sbjct: 11  PFYATQTASSSRFWRVLSPKSRTGIAL 37


>SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 293

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 612 YYTCTNRALLLQFPRLTYTWRRDSW 538
           Y+T TN  ++ +   + + WRR SW
Sbjct: 88  YFTVTNSYVVAKLLLIIFPWRRRSW 112


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +1

Query: 277  IPQRPSLTEQLKVAKVARLLDKKHENLLSADQKKELARLRDGKQVGNFKM 426
            + Q+  L  QLK   ++ L+DKK+E    A  K    R  D K +  F M
Sbjct: 2438 VEQKFKLVLQLKGFGIS-LIDKKYEEFAYATLKNFTFRFDDSKDLNTFGM 2486


>SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 266

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +1

Query: 241 NVEVETSPGPSGIPQRPSLTEQLKVAKVARLLDKKHENLLS 363
           N+E   +P PS      +LT +L+ +KV+RL+++    LLS
Sbjct: 172 NLERSKTPDPSEDEGEFALTLKLQFSKVSRLINQGLTPLLS 212


>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
           aminotransferase Eca39|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 341 KSMRICCLRTKKRSWPG 391
           K++++CC     R+WPG
Sbjct: 187 KAVKLCCSEESVRAWPG 203


>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 266

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = +1

Query: 277 IPQRPSLTEQLKVAKVARLLDKKHENLLSADQKKELARLRDGKQVGNFKMP 429
           +  R  + E ++  KV +   K HE+ LS+    E+         G+F+ P
Sbjct: 161 VESRDEIKELIEKQKVQKESVKSHESELSSVMSSEILPKASSDSAGSFEPP 211


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,614,233
Number of Sequences: 5004
Number of extensions: 48471
Number of successful extensions: 171
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)