Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1m19
         (668 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0900 - 21436508-21437521                                         29   2.5  
07_03_1140 - 24258627-24258849,24259967-24260089,24260200-242609...    28   5.9  
04_03_0926 - 20861383-20862198,20862359-20862430,20862938-208631...    28   5.9  
04_04_0411 - 25014511-25015015,25015098-25015169,25015700-250157...    28   7.7  

>10_08_0900 - 21436508-21437521
          Length = 337

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 22/69 (31%), Positives = 29/69 (42%)
 Frame = -2

Query: 379 PFFGPQTANSHAFYPKASPPWRLSIALSMKAVVEFQMGLEKFPLPRFHLQDVKKAKIGHS 200
           PF GP     HAF PK     RL +  S    V+F +      +    L+ V   +IGH 
Sbjct: 203 PFDGPLGILGHAFSPKNG---RLHLDASEHWAVDFDVDATASAI---DLESVATHEIGHV 256

Query: 199 VAYGHPYRP 173
           +  GH   P
Sbjct: 257 LGLGHSASP 265


>07_03_1140 -
           24258627-24258849,24259967-24260089,24260200-24260921,
           24260945-24261073,24261484-24261714
          Length = 475

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = -2

Query: 175 P*RPSDHHLEQLHVLSPLPSPDVVSWHPDHFGLQFRKY*NSSQFGTTLISQHTRTTHL 2
           P + S+ + E + VL  LP+  +V   P   G  +RKY   +  G      + + THL
Sbjct: 184 PSQISNVNTESIGVLQGLPASSIVLDRPTDDGYNWRKYGQKAVKGGEYPKSYYKCTHL 241


>04_03_0926 -
           20861383-20862198,20862359-20862430,20862938-20863123,
           20863214-20863304,20863698-20863852,20864501-20864579,
           20866797-20867263
          Length = 621

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 244 VEVETSPGPSGIPQRPSLTEQLKVAKVARL 333
           VEV+  PGPSG+    +  E+++  K  RL
Sbjct: 96  VEVKADPGPSGVSMEEAKAEEVEEEKGERL 125


>04_04_0411 -
           25014511-25015015,25015098-25015169,25015700-25015734,
           25015805-25015873,25015993-25016044,25016444-25016526,
           25016625-25016726,25017150-25017884,25017962-25018012,
           25018792-25018983,25019066-25019216,25020012-25020193,
           25020329-25020532,25020752-25020859
          Length = 846

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 20/69 (28%), Positives = 29/69 (42%)
 Frame = +1

Query: 232 GDENVEVETSPGPSGIPQRPSLTEQLKVAKVARLLDKKHENLLSADQKKELARLRDGKQV 411
           G +N    +S  P G   R SL EQ K  K+      KH     AD  K+  R +  +  
Sbjct: 644 GRDNNPDASSDMPHGRRGRVSLGEQTKEGKIETPSSGKHRGTDVADPPKKRGRPKGVRSS 703

Query: 412 GNFKMPDAP 438
            + +  D+P
Sbjct: 704 NSSQNDDSP 712


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,164,213
Number of Sequences: 37544
Number of extensions: 372534
Number of successful extensions: 1273
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1273
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)