Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc1m19
(668 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U31929-1|AAC13875.1| 470|Homo sapiens orphan nuclear receptor p... 33 1.2
S74720-1|AAB32751.1| 470|Homo sapiens DAX-1 protein. 33 1.2
BC011564-1|AAH11564.1| 470|Homo sapiens nuclear receptor subfam... 33 1.2
AK095783-1|BAC04626.1| 215|Homo sapiens protein ( Homo sapiens ... 33 1.2
AK021656-1|BAB13867.1| 137|Homo sapiens protein ( Homo sapiens ... 33 1.2
AK124132-1|BAC85784.1| 180|Homo sapiens protein ( Homo sapiens ... 31 2.8
D38163-1|BAA07368.1| 1142|Homo sapiens a1(XIX) collagen chain pr... 31 3.7
EF199840-1|ABM90426.1| 508|Homo sapiens erasin protein. 30 6.5
D87684-1|BAA13437.1| 529|Homo sapiens KIAA0242 protein protein. 30 6.5
BC035594-1|AAH35594.1| 508|Homo sapiens UBXD2 protein protein. 30 6.5
AC011893-2|AAX88923.1| 508|Homo sapiens unknown protein. 30 6.5
>U31929-1|AAC13875.1| 470|Homo sapiens orphan nuclear receptor
protein.
Length = 470
Score = 32.7 bits (71), Expect = 1.2
Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = -2
Query: 106 VSWHPDHFGLQFRKY*NSSQFGT-TLISQHTRTTH 5
V ++PD GLQ KY Q+GT ++S+HTR TH
Sbjct: 385 VLFNPDVPGLQCVKYIQGLQWGTQQILSEHTRMTH 419
>S74720-1|AAB32751.1| 470|Homo sapiens DAX-1 protein.
Length = 470
Score = 32.7 bits (71), Expect = 1.2
Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = -2
Query: 106 VSWHPDHFGLQFRKY*NSSQFGT-TLISQHTRTTH 5
V ++PD GLQ KY Q+GT ++S+HTR TH
Sbjct: 385 VLFNPDVPGLQCVKYIQGLQWGTQQILSEHTRMTH 419
>BC011564-1|AAH11564.1| 470|Homo sapiens nuclear receptor subfamily
0, group B, member 1 protein.
Length = 470
Score = 32.7 bits (71), Expect = 1.2
Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = -2
Query: 106 VSWHPDHFGLQFRKY*NSSQFGT-TLISQHTRTTH 5
V ++PD GLQ KY Q+GT ++S+HTR TH
Sbjct: 385 VLFNPDVPGLQCVKYIQGLQWGTQQILSEHTRMTH 419
>AK095783-1|BAC04626.1| 215|Homo sapiens protein ( Homo sapiens
cDNA FLJ38464 fis, clone FEBRA2021171. ).
Length = 215
Score = 32.7 bits (71), Expect = 1.2
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -2
Query: 415 CPLACHRAAWPAPFFGPQTANSHAFYPKASPPWRLSIALSMKA 287
CP CH W P+ P A+S + + W+ A S++A
Sbjct: 31 CPCRCHSHCWRWPYLQPVPASSSSSWASFQGSWQPESAASLRA 73
>AK021656-1|BAB13867.1| 137|Homo sapiens protein ( Homo sapiens
cDNA FLJ11594 fis, clone HEMBA1003804. ).
Length = 137
Score = 32.7 bits (71), Expect = 1.2
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = -1
Query: 440 SGASGILKLPTCLPSRSLASSFFWSADSKFSCFLSKSLATLATFNCSVNEGRCGIPDGPG 261
S A G+ L CLP+ S S ADS+ SC + L ++T NC +N P G
Sbjct: 69 SEALGLPDLDLCLPASSTPS-----ADSRPSCIGAAPLRPVSTSNC-LNSSHSATPLGSL 122
Query: 260 EVS---TSTFSSPRC 225
+ +ST +SP C
Sbjct: 123 SATLHCSSTSASPSC 137
>AK124132-1|BAC85784.1| 180|Homo sapiens protein ( Homo sapiens
cDNA FLJ42138 fis, clone TESTI2036684. ).
Length = 180
Score = 31.5 bits (68), Expect = 2.8
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = -2
Query: 409 LACHRAAWPAPF---FGPQTANSHAFYPKASPPWRL 311
+A +AWPAPF G QTA + AF + + PW L
Sbjct: 114 MASEHSAWPAPFLSCLGSQTAQASAF--ELASPWNL 147
>D38163-1|BAA07368.1| 1142|Homo sapiens a1(XIX) collagen chain
precursor protein.
Length = 1142
Score = 31.1 bits (67), Expect = 3.7
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -1
Query: 392 SLASSFFWSADSKFSCFLSKSLATLATFNCSVNEGRCGIPDGPG 261
++ASS+ + SK S +L L C N+G G+P PG
Sbjct: 258 NIASSWVTAHASKMSSYLPAKLELKDQCQCIPNKGEAGLPGAPG 301
>EF199840-1|ABM90426.1| 508|Homo sapiens erasin protein.
Length = 508
Score = 30.3 bits (65), Expect = 6.5
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Frame = +1
Query: 232 GDENVEVETSPGPSGIP-QRPSLTEQLKVAKVARLLDKKHENLLSADQ----KKELARLR 396
G+ +S PSG QRP+ ++V ++ + L+++ E ++ KKE+ R +
Sbjct: 171 GESAGHATSSQEPSGCSDQRPAEDLNIRVERLTKKLEERREEKRKEEEQREIKKEIERRK 230
Query: 397 DGKQVGNFKMPDAPE 441
GK++ ++K E
Sbjct: 231 TGKEMLDYKRKQEEE 245
>D87684-1|BAA13437.1| 529|Homo sapiens KIAA0242 protein protein.
Length = 529
Score = 30.3 bits (65), Expect = 6.5
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Frame = +1
Query: 232 GDENVEVETSPGPSGIP-QRPSLTEQLKVAKVARLLDKKHENLLSADQ----KKELARLR 396
G+ +S PSG QRP+ ++V ++ + L+++ E ++ KKE+ R +
Sbjct: 192 GESAGHATSSQEPSGCSDQRPAEDLNIRVERLTKKLEERREEKRKEEEQREIKKEIERRK 251
Query: 397 DGKQVGNFKMPDAPE 441
GK++ ++K E
Sbjct: 252 TGKEMLDYKRKQEEE 266
>BC035594-1|AAH35594.1| 508|Homo sapiens UBXD2 protein protein.
Length = 508
Score = 30.3 bits (65), Expect = 6.5
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Frame = +1
Query: 232 GDENVEVETSPGPSGIP-QRPSLTEQLKVAKVARLLDKKHENLLSADQ----KKELARLR 396
G+ +S PSG QRP+ ++V ++ + L+++ E ++ KKE+ R +
Sbjct: 171 GESAGHATSSQEPSGCSDQRPAEDLNIRVERLTKKLEERREEKRKEEEQREIKKEIERRK 230
Query: 397 DGKQVGNFKMPDAPE 441
GK++ ++K E
Sbjct: 231 TGKEMLDYKRKQEEE 245
>AC011893-2|AAX88923.1| 508|Homo sapiens unknown protein.
Length = 508
Score = 30.3 bits (65), Expect = 6.5
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Frame = +1
Query: 232 GDENVEVETSPGPSGIP-QRPSLTEQLKVAKVARLLDKKHENLLSADQ----KKELARLR 396
G+ +S PSG QRP+ ++V ++ + L+++ E ++ KKE+ R +
Sbjct: 171 GESAGHATSSQEPSGCSDQRPAEDLNIRVERLTKKLEERREEKRKEEEQREIKKEIERRK 230
Query: 397 DGKQVGNFKMPDAPE 441
GK++ ++K E
Sbjct: 231 TGKEMLDYKRKQEEE 245
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,822,664
Number of Sequences: 237096
Number of extensions: 2025862
Number of successful extensions: 10093
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 9654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10093
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7591280850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -