Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1m19
         (668 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY118590-1|AAM49959.1| 1858|Drosophila melanogaster LD45234p pro...    34   0.15 
AJ277189-1|CAB85484.1|  567|Drosophila melanogaster mod(mdg4)62....    31   1.1  
AE014297-2998|AAO41585.1|  567|Drosophila melanogaster CG32491-P...    31   1.1  
AJ277789-1|CAB93525.1| 1738|Drosophila melanogaster mismatch dep...    29   5.7  
AF132141-1|AAD33588.1| 1095|Drosophila melanogaster G/T mismatch...    29   5.7  
AE014135-90|AAF59338.1| 1738|Drosophila melanogaster CG1981-PA p...    29   5.7  
BT029718-1|ABL75775.1|  138|Drosophila melanogaster IP17554p pro...    29   7.6  
BT029658-1|ABL75716.1|  138|Drosophila melanogaster IP17254p pro...    29   7.6  
AY070548-1|AAL48019.1|  539|Drosophila melanogaster LD27847p pro...    29   7.6  
AE014296-3036|AAF49248.1|  539|Drosophila melanogaster CG6897-PA...    29   7.6  

>AY118590-1|AAM49959.1| 1858|Drosophila melanogaster LD45234p
           protein.
          Length = 1858

 Score = 34.3 bits (75), Expect = 0.15
 Identities = 14/48 (29%), Positives = 29/48 (60%)
 Frame = +1

Query: 250 VETSPGPSGIPQRPSLTEQLKVAKVARLLDKKHENLLSADQKKELARL 393
           ++ +   + IP+  SL + +  A+  RLL  + ++LLS +Q KE+ ++
Sbjct: 580 IQAATPAAAIPREDSLPDDMTAAEAERLLSSRQQSLLSDEQAKEVEQI 627


>AJ277189-1|CAB85484.1|  567|Drosophila melanogaster mod(mdg4)62.3
           protein.
          Length = 567

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +3

Query: 102 ETTSGLGSGE--RTWSCSRWWSEGRQGR*GWP*ATLCPIFAFFT 227
           E T  L SGE  R W C++WW++  + R       +CP+  F T
Sbjct: 429 EKTLKLSSGEEKRFWRCNQWWNQKCRSRVFTINDVVCPLNRFHT 472


>AE014297-2998|AAO41585.1|  567|Drosophila melanogaster CG32491-PV,
           isoform V protein.
          Length = 567

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +3

Query: 102 ETTSGLGSGE--RTWSCSRWWSEGRQGR*GWP*ATLCPIFAFFT 227
           E T  L SGE  R W C++WW++  + R       +CP+  F T
Sbjct: 429 EKTLKLSSGEEKRFWRCNQWWNQKCRSRVFTINDVVCPLNRFHT 472


>AJ277789-1|CAB93525.1| 1738|Drosophila melanogaster mismatch depedent
            uracil/thymineDNA glycosylase protein.
          Length = 1738

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = -2

Query: 205  HSVAYGHPYRP*RPSDHHLEQLHVLSPLPSPDVVSWHPDHFG 80
            H++++ HP  P  P   +++Q H ++ +PS +V S +   +G
Sbjct: 1605 HTISHPHPPHP-HPHSMYVDQAHHMAHIPSVNVNSMYGPAYG 1645


>AF132141-1|AAD33588.1| 1095|Drosophila melanogaster G/T
            mismatch-specific thymineDNA glycosylase protein.
          Length = 1095

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = -2

Query: 205  HSVAYGHPYRP*RPSDHHLEQLHVLSPLPSPDVVSWHPDHFG 80
            H++++ HP  P  P   +++Q H ++ +PS +V S +   +G
Sbjct: 962  HTISHPHPPHP-HPHSMYVDQAHHMAHIPSVNVNSMYGPAYG 1002


>AE014135-90|AAF59338.1| 1738|Drosophila melanogaster CG1981-PA
            protein.
          Length = 1738

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = -2

Query: 205  HSVAYGHPYRP*RPSDHHLEQLHVLSPLPSPDVVSWHPDHFG 80
            H++++ HP  P  P   +++Q H ++ +PS +V S +   +G
Sbjct: 1605 HTISHPHPPHP-HPHSMYVDQAHHMAHIPSVNVNSMYGPAYG 1645


>BT029718-1|ABL75775.1|  138|Drosophila melanogaster IP17554p
           protein.
          Length = 138

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 25/97 (25%), Positives = 45/97 (46%)
 Frame = -2

Query: 412 PLACHRAAWPAPFFGPQTANSHAFYPKASPPWRLSIALSMKAVVEFQMGLEKFPLPRFHL 233
           P  C R+AW +P+  P++  S +  P+A  P R     S ++   +   +E+   P+   
Sbjct: 44  PCPCRRSAWFSPYPCPRSTRSPS-VPRARDPRRSPARPSTRSHSAYIEPVEEGAAPQV-A 101

Query: 232 QDVKKAKIGHSVAYGHPYRP*RPSDHHLEQLHVLSPL 122
           +DV ++K  HS          R S   + ++H + PL
Sbjct: 102 RDVTQSK--HSEICAQVDIEARTSKTCICRIHFIKPL 136


>BT029658-1|ABL75716.1|  138|Drosophila melanogaster IP17254p
           protein.
          Length = 138

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 25/97 (25%), Positives = 45/97 (46%)
 Frame = -2

Query: 412 PLACHRAAWPAPFFGPQTANSHAFYPKASPPWRLSIALSMKAVVEFQMGLEKFPLPRFHL 233
           P  C R+AW +P+  P++  S +  P+A  P R     S ++   +   +E+   P+   
Sbjct: 44  PCPCRRSAWFSPYPCPRSTRSPS-VPRARDPRRSPARPSTRSHSAYIEPVEEGAAPQV-A 101

Query: 232 QDVKKAKIGHSVAYGHPYRP*RPSDHHLEQLHVLSPL 122
           +DV ++K  HS          R S   + ++H + PL
Sbjct: 102 RDVTQSK--HSEICAQVDIEARTSKTCICRIHFIKPL 136


>AY070548-1|AAL48019.1|  539|Drosophila melanogaster LD27847p
           protein.
          Length = 539

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = -1

Query: 410 TCLPSRSLASSFFWSADSKFSCFLSKSLATLATFNC-SVNEGRCGIPDGPGEVSTSTFSS 234
           T  PSRS+  S      + F+  LS S +  ++F C S     CG+P  PG     T S 
Sbjct: 258 TAEPSRSMVGSSPQGKQTMFAGRLSDSASGESSFGCLSPIRNLCGLP--PGTPDNGTCSG 315

Query: 233 PR 228
            R
Sbjct: 316 KR 317


>AE014296-3036|AAF49248.1|  539|Drosophila melanogaster CG6897-PA
           protein.
          Length = 539

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = -1

Query: 410 TCLPSRSLASSFFWSADSKFSCFLSKSLATLATFNC-SVNEGRCGIPDGPGEVSTSTFSS 234
           T  PSRS+  S      + F+  LS S +  ++F C S     CG+P  PG     T S 
Sbjct: 258 TAEPSRSMVGSSPQGKQTMFAGRLSDSASGESSFGCLSPIRNLCGLP--PGTPDNGTCSG 315

Query: 233 PR 228
            R
Sbjct: 316 KR 317


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,350,561
Number of Sequences: 53049
Number of extensions: 585273
Number of successful extensions: 1920
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1920
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2889369000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)