Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1m18
         (712 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0719 + 5239238-5239635,5239735-5239945,5240379-5240454,524...    29   2.8  
04_04_0996 + 29990255-29990425,29990797-29990841,29991024-299910...    29   4.8  
11_01_0442 - 3369827-3370168,3370608-3372616,3372953-3373277,337...    28   6.4  
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502...    28   6.4  
07_03_0349 - 17051786-17052376                                         28   8.4  
06_01_0806 - 6048042-6048138,6048461-6048550,6049362-6049425,604...    28   8.4  

>06_01_0719 +
           5239238-5239635,5239735-5239945,5240379-5240454,
           5240573-5240675,5241089-5241157,5241318-5241354,
           5241445-5241519,5241598-5241649,5241752-5241796,
           5241994-5242080,5242348-5242445
          Length = 416

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +3

Query: 168 KDIASSLKYGNCKDAVSRHVDKKY 239
           K +A S+  GN KD VSR +DK Y
Sbjct: 136 KTLAESMALGNIKDYVSRPMDKPY 159


>04_04_0996 +
           29990255-29990425,29990797-29990841,29991024-29991098,
           29991481-29991691,29992057-29992442,29993202-29993425,
           29993529-29993664,29993699-29993761,29993842-29994021
          Length = 496

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/42 (26%), Positives = 18/42 (42%)
 Frame = -2

Query: 297 PRCLEPRAVVSPPTRCTYICIFYPRVCLQRLYNFHILNCWRC 172
           P C +P   +        IC F+P   + ++ N   + CW C
Sbjct: 408 PNCRQPNPKIVEDNFSHIICTFHPFAVIWQMGNNSHMFCWAC 449


>11_01_0442 -
           3369827-3370168,3370608-3372616,3372953-3373277,
           3373386-3373415
          Length = 901

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 17/68 (25%), Positives = 32/68 (47%)
 Frame = +3

Query: 459 DPAIKQQEEKNKQLVTKLIATFTEHTNALQAVVAQKTEELFKKQEFIERIIAIKDKQIEA 638
           D  +   ++  K+ V +L     E    ++  VA+KT+EL   +  ++  I    +Q+EA
Sbjct: 145 DDQVNHLDDALKECVRQLRQAREEQEEKIRDAVAKKTQELDSHKSELQNHIYELKQQLEA 204

Query: 639 KDLQVTRV 662
             L+   V
Sbjct: 205 AKLEAATV 212


>03_05_0293 +
           22849103-22849513,22849670-22849756,22850156-22850284,
           22850507-22851262,22853474-22854250
          Length = 719

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 170 LGHKLDLRVSLLE-HVPQRKRVLAEFELPDFNLS 72
           L  KL+     LE H+P R+  + +F+LP F +S
Sbjct: 329 LAEKLNSEPEFLEKHIPTRQVTVGQFKLPKFKIS 362


>07_03_0349 - 17051786-17052376
          Length = 196

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -2

Query: 297 PRCLEPRAVVSPPTRCTYICIFYPRVCLQR 208
           P CL  R +V PPTR  Y      R+ L R
Sbjct: 42  PACLRRRRLVLPPTRLAYYAAAVGRLRLHR 71


>06_01_0806 -
           6048042-6048138,6048461-6048550,6049362-6049425,
           6049504-6049552,6050403-6050459,6050953-6051024,
           6051912-6052003,6052542-6052614,6052686-6052748,
           6052837-6052901,6053803-6053890,6053974-6054015,
           6054097-6054188,6054601-6054688,6055134-6055225,
           6055368-6055419
          Length = 391

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +3

Query: 204 KDAVSRHVDKKYKYTYSESGARLPPSAPNSVAKQGDPLYLQPHTVLITK 350
           +D    HVDKK  +T +  G ++     +  A+   P  +QP  V++ +
Sbjct: 258 RDGADIHVDKKISFTQAMLGGKVEVPTLDGTAEVKIPKGVQPGQVIVLR 306


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,733,530
Number of Sequences: 37544
Number of extensions: 384239
Number of successful extensions: 1210
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1209
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)