Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1m18
         (712 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-4234|AAF56792.1|  421|Drosophila melanogaster CG1894-PA...    31   1.5  
AE014134-1643|AAS64663.1| 1494|Drosophila melanogaster CG33298-P...    31   1.5  
AE014134-1642|AAS64662.1| 1517|Drosophila melanogaster CG33298-P...    31   1.5  
BT001721-1|AAN71476.1| 1120|Drosophila melanogaster RE69223p pro...    29   4.7  
AE014296-348|AAS64933.1| 1120|Drosophila melanogaster CG13921-PB...    29   4.7  
AE014296-347|AAF47561.2| 1314|Drosophila melanogaster CG13921-PA...    29   4.7  
BT023130-1|AAY55546.1|  207|Drosophila melanogaster IP08767p pro...    29   6.2  
BT023086-1|AAY55502.1|  207|Drosophila melanogaster IP08667p pro...    29   6.2  
BT022998-1|AAY55414.1|  207|Drosophila melanogaster IP08467p pro...    29   6.2  
AE014297-2515|AAF55549.1|  194|Drosophila melanogaster CG7676-PA...    29   6.2  
L05109-1|AAA70421.1|  632|Drosophila melanogaster poly(A)-bindin...    29   8.2  
AY118528-1|AAM49897.1|  634|Drosophila melanogaster LD24412p pro...    29   8.2  
AE014297-4737|AAF57145.2| 1284|Drosophila melanogaster CG11339-P...    29   8.2  
AE013599-2628|AAS64811.1|  634|Drosophila melanogaster CG5119-PH...    29   8.2  
AE013599-2627|AAM68178.1|  634|Drosophila melanogaster CG5119-PG...    29   8.2  
AE013599-2626|AAF57747.1|  634|Drosophila melanogaster CG5119-PF...    29   8.2  
AE013599-2625|AAM68177.1|  634|Drosophila melanogaster CG5119-PE...    29   8.2  
AE013599-2624|AAM68176.1|  634|Drosophila melanogaster CG5119-PD...    29   8.2  
AE013599-2623|AAF57746.1|  634|Drosophila melanogaster CG5119-PC...    29   8.2  
AE013599-2622|AAF57745.1|  634|Drosophila melanogaster CG5119-PB...    29   8.2  
AE013599-2621|AAM68175.1|  634|Drosophila melanogaster CG5119-PA...    29   8.2  

>AE014297-4234|AAF56792.1|  421|Drosophila melanogaster CG1894-PA
           protein.
          Length = 421

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = -2

Query: 282 PRAVVSPPTRCTYICIFYPR-VCLQRLYNFHILNC-WRCP 169
           P  V++      Y+C F  + +CL++ Y++H+ +C  RCP
Sbjct: 163 PYPVINDKATTIYVCEFCLKYMCLRKSYSYHLYDCKKRCP 202


>AE014134-1643|AAS64663.1| 1494|Drosophila melanogaster CG33298-PA,
           isoform A protein.
          Length = 1494

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 5/107 (4%)
 Frame = +3

Query: 222 HVDKKYKYTYSESGARLPPSAPN-----SVAKQGDPLYLQPHTVLITKSGVIQLIMKSKL 386
           H   + +  YS+ GA  PP  PN      +A+     YL PH   I +  V+  I  + +
Sbjct: 638 HPPSELEKIYSKPGAPAPPLIPNDNLNSDMAQLTQGTYLTPHAQRIQEFLVVLAICNTVI 697

Query: 387 PYAIELQEWLLEEVIPQVLCTGKYDPAIKQQEEKNKQLVTKLIATFT 527
             A   ++ +    I +V   G     +K  +++ K L +    T T
Sbjct: 698 VGAAPHRDMMNASGIIEVQQIGNSPANLKHGKQRQKLLASSTSTTTT 744


>AE014134-1642|AAS64662.1| 1517|Drosophila melanogaster CG33298-PB,
           isoform B protein.
          Length = 1517

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 5/107 (4%)
 Frame = +3

Query: 222 HVDKKYKYTYSESGARLPPSAPN-----SVAKQGDPLYLQPHTVLITKSGVIQLIMKSKL 386
           H   + +  YS+ GA  PP  PN      +A+     YL PH   I +  V+  I  + +
Sbjct: 638 HPPSELEKIYSKPGAPAPPLIPNDNLNSDMAQLTQGTYLTPHAQRIQEFLVVLAICNTVI 697

Query: 387 PYAIELQEWLLEEVIPQVLCTGKYDPAIKQQEEKNKQLVTKLIATFT 527
             A   ++ +    I +V   G     +K  +++ K L +    T T
Sbjct: 698 VGAAPHRDMMNASGIIEVQQIGNSPANLKHGKQRQKLLASSTSTTTT 744


>BT001721-1|AAN71476.1| 1120|Drosophila melanogaster RE69223p
           protein.
          Length = 1120

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 249 YSESGARLPPSAPNSVAKQGDPLYLQPHTVLITKSGVIQLIM 374
           Y   G   P S PNS A++G   YLQP   L+   G + + +
Sbjct: 658 YGVWGPPPPYSDPNSPARRGYYQYLQPTACLVGNQGTVAVTL 699


>AE014296-348|AAS64933.1| 1120|Drosophila melanogaster CG13921-PB,
           isoform B protein.
          Length = 1120

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 249 YSESGARLPPSAPNSVAKQGDPLYLQPHTVLITKSGVIQLIM 374
           Y   G   P S PNS A++G   YLQP   L+   G + + +
Sbjct: 658 YGVWGPPPPYSDPNSPARRGYYQYLQPTACLVGNQGTVAVTL 699


>AE014296-347|AAF47561.2| 1314|Drosophila melanogaster CG13921-PA,
           isoform A protein.
          Length = 1314

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 249 YSESGARLPPSAPNSVAKQGDPLYLQPHTVLITKSGVIQLIM 374
           Y   G   P S PNS A++G   YLQP   L+   G + + +
Sbjct: 852 YGVWGPPPPYSDPNSPARRGYYQYLQPTACLVGNQGTVAVTL 893


>BT023130-1|AAY55546.1|  207|Drosophila melanogaster IP08767p
           protein.
          Length = 207

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 507 KLIATFTEHTNALQAVVAQKTEELFKKQEFI 599
           K I    + T  ++A  A KTEEL KK+EF+
Sbjct: 142 KTILNTKKETQEIRAKTALKTEELKKKREFV 172


>BT023086-1|AAY55502.1|  207|Drosophila melanogaster IP08667p
           protein.
          Length = 207

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 507 KLIATFTEHTNALQAVVAQKTEELFKKQEFI 599
           K I    + T  ++A  A KTEEL KK+EF+
Sbjct: 142 KTILNTKKETQEIRAKTALKTEELKKKREFV 172


>BT022998-1|AAY55414.1|  207|Drosophila melanogaster IP08467p
           protein.
          Length = 207

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 507 KLIATFTEHTNALQAVVAQKTEELFKKQEFI 599
           K I    + T  ++A  A KTEEL KK+EF+
Sbjct: 142 KTILNTKKETQEIRAKTALKTEELKKKREFV 172


>AE014297-2515|AAF55549.1|  194|Drosophila melanogaster CG7676-PA
           protein.
          Length = 194

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 507 KLIATFTEHTNALQAVVAQKTEELFKKQEFI 599
           K I    + T  ++A  A KTEEL KK+EF+
Sbjct: 142 KTILNTKKETQEIRAKTALKTEELKKKREFV 172


>L05109-1|AAA70421.1|  632|Drosophila melanogaster poly(A)-binding
           protein protein.
          Length = 632

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -3

Query: 656 RHLQVFGLNLLVLNCDDAFD 597
           RH  VFG+NL V N DD  D
Sbjct: 278 RHESVFGVNLYVKNLDDTID 297


>AY118528-1|AAM49897.1|  634|Drosophila melanogaster LD24412p
           protein.
          Length = 634

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -3

Query: 656 RHLQVFGLNLLVLNCDDAFD 597
           RH  VFG+NL V N DD  D
Sbjct: 280 RHESVFGVNLYVKNLDDTID 299


>AE014297-4737|AAF57145.2| 1284|Drosophila melanogaster CG11339-PA
           protein.
          Length = 1284

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +2

Query: 419 RRSNSSSAMHGQVRPRN*TTGGKEQTVGD*TDCDIYRAHKRAASGGGAKNRGTF*KARVY 598
           +R++SSSA H Q R R+ +           T    +R H+R +      +RG+    R  
Sbjct: 504 QRASSSSASHQQQRYRSSSVESHSSNDSRSTRKHKHR-HRRTSDNESELSRGSGRSGRSG 562

Query: 599 RTHHR 613
           R+HHR
Sbjct: 563 RSHHR 567


>AE013599-2628|AAS64811.1|  634|Drosophila melanogaster CG5119-PH,
           isoform H protein.
          Length = 634

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -3

Query: 656 RHLQVFGLNLLVLNCDDAFD 597
           RH  VFG+NL V N DD  D
Sbjct: 280 RHESVFGVNLYVKNLDDTID 299


>AE013599-2627|AAM68178.1|  634|Drosophila melanogaster CG5119-PG,
           isoform G protein.
          Length = 634

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -3

Query: 656 RHLQVFGLNLLVLNCDDAFD 597
           RH  VFG+NL V N DD  D
Sbjct: 280 RHESVFGVNLYVKNLDDTID 299


>AE013599-2626|AAF57747.1|  634|Drosophila melanogaster CG5119-PF,
           isoform F protein.
          Length = 634

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -3

Query: 656 RHLQVFGLNLLVLNCDDAFD 597
           RH  VFG+NL V N DD  D
Sbjct: 280 RHESVFGVNLYVKNLDDTID 299


>AE013599-2625|AAM68177.1|  634|Drosophila melanogaster CG5119-PE,
           isoform E protein.
          Length = 634

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -3

Query: 656 RHLQVFGLNLLVLNCDDAFD 597
           RH  VFG+NL V N DD  D
Sbjct: 280 RHESVFGVNLYVKNLDDTID 299


>AE013599-2624|AAM68176.1|  634|Drosophila melanogaster CG5119-PD,
           isoform D protein.
          Length = 634

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -3

Query: 656 RHLQVFGLNLLVLNCDDAFD 597
           RH  VFG+NL V N DD  D
Sbjct: 280 RHESVFGVNLYVKNLDDTID 299


>AE013599-2623|AAF57746.1|  634|Drosophila melanogaster CG5119-PC,
           isoform C protein.
          Length = 634

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -3

Query: 656 RHLQVFGLNLLVLNCDDAFD 597
           RH  VFG+NL V N DD  D
Sbjct: 280 RHESVFGVNLYVKNLDDTID 299


>AE013599-2622|AAF57745.1|  634|Drosophila melanogaster CG5119-PB,
           isoform B protein.
          Length = 634

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -3

Query: 656 RHLQVFGLNLLVLNCDDAFD 597
           RH  VFG+NL V N DD  D
Sbjct: 280 RHESVFGVNLYVKNLDDTID 299


>AE013599-2621|AAM68175.1|  634|Drosophila melanogaster CG5119-PA,
           isoform A protein.
          Length = 634

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -3

Query: 656 RHLQVFGLNLLVLNCDDAFD 597
           RH  VFG+NL V N DD  D
Sbjct: 280 RHESVFGVNLYVKNLDDTID 299


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,295,897
Number of Sequences: 53049
Number of extensions: 656563
Number of successful extensions: 2145
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 2040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2145
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3149551053
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)