Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1m15
         (729 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC063136-1|AAH63136.1|  538|Homo sapiens NEB protein protein.          31   3.2  
AK056994-1|BAB71337.1|  500|Homo sapiens protein ( Homo sapiens ...    31   3.2  
AK128694-1|BAC87575.1|  291|Homo sapiens protein ( Homo sapiens ...    31   5.6  

>BC063136-1|AAH63136.1|  538|Homo sapiens NEB protein protein.
          Length = 538

 Score = 31.5 bits (68), Expect = 3.2
 Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 14/73 (19%)
 Frame = +3

Query: 252 TSRILRVKHDQE-MTSFVFQN*TG------FTSRILRVKHNQE-VMSFVFQN*TG----- 392
           T  + RVKH+QE ++S +++   G       T  + RVKHNQE + S +++   G     
Sbjct: 67  TPEMQRVKHNQENLSSVLYKENMGKGTPLPVTPEMERVKHNQENISSVLYKENMGKGTPL 126

Query: 393 -FTSRILRVKHNQ 428
             T  + RVKHNQ
Sbjct: 127 PVTPEMERVKHNQ 139



 Score = 30.7 bits (66), Expect = 5.6
 Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 14/73 (19%)
 Frame = +3

Query: 252 TSRILRVKHDQE-MTSFVFQN*TG------FTSRILRVKHNQE-VMSFVFQN*TG----- 392
           T  + RVKH+QE ++S +++   G       T  + RVKHNQE + S +++   G     
Sbjct: 98  TPEMERVKHNQENISSVLYKENMGKGTPLPVTPEMERVKHNQENISSVLYKENMGKGTPL 157

Query: 393 -FTSRILRVKHNQ 428
             T  + RVKHNQ
Sbjct: 158 PVTPEMERVKHNQ 170


>AK056994-1|BAB71337.1|  500|Homo sapiens protein ( Homo sapiens
           cDNA FLJ32432 fis, clone SKMUS2001157, highly similar to
           Homo sapiens nebulin (NEB) gene. ).
          Length = 500

 Score = 31.5 bits (68), Expect = 3.2
 Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 14/73 (19%)
 Frame = +3

Query: 252 TSRILRVKHDQE-MTSFVFQN*TG------FTSRILRVKHNQE-VMSFVFQN*TG----- 392
           T  + RVKH+QE ++S +++   G       T  + RVKHNQE + S +++   G     
Sbjct: 29  TPEMQRVKHNQENLSSVLYKENMGKGTPLPVTPEMERVKHNQENISSVLYKENMGKGTPL 88

Query: 393 -FTSRILRVKHNQ 428
             T  + RVKHNQ
Sbjct: 89  PVTPEMERVKHNQ 101



 Score = 30.7 bits (66), Expect = 5.6
 Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 14/73 (19%)
 Frame = +3

Query: 252 TSRILRVKHDQE-MTSFVFQN*TG------FTSRILRVKHNQE-VMSFVFQN*TG----- 392
           T  + RVKH+QE ++S +++   G       T  + RVKHNQE + S +++   G     
Sbjct: 60  TPEMERVKHNQENISSVLYKENMGKGTPLPVTPEMERVKHNQENISSVLYKENMGKGTPL 119

Query: 393 -FTSRILRVKHNQ 428
             T  + RVKHNQ
Sbjct: 120 AVTPEMERVKHNQ 132


>AK128694-1|BAC87575.1|  291|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46861 fis, clone UTERU3011092. ).
          Length = 291

 Score = 30.7 bits (66), Expect = 5.6
 Identities = 20/90 (22%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
 Frame = +1

Query: 463 HLNFYDARIVCCCVSF---IDDFLFVCFIDLFVIMINYKFFVGVNIDSVIRIYNVF-ICV 630
           H++ Y       C+     I  + ++C I ++  M  Y  ++ ++  + I +Y+   IC+
Sbjct: 64  HMHTYVYSYTRICIHMYVHIHAYAYIC-IFIYTHMHTY-MYIHMHAYAYIYVYSYTRICI 121

Query: 631 NVTLIM*RHMVFYIYFNTITTIHVKSFLIT 720
           ++ + +  HM  Y+  +  T IH+  F+ T
Sbjct: 122 HICIFICTHMHTYMCIHMYTCIHICVFMCT 151


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,736,659
Number of Sequences: 237096
Number of extensions: 1265851
Number of successful extensions: 1861
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1861
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8623170556
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)