Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc1m14
(721 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 217 1e-57
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ... 81 2e-16
SPAC4D7.12c |fet5||transcription factor Fet5|Schizosaccharomyces... 67 3e-12
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|... 31 0.17
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 2.0
SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core ... 27 2.7
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 27 3.6
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c... 26 4.7
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce... 26 6.2
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2... 26 6.2
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 25 8.2
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 25 8.2
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 217 bits (530), Expect = 1e-57
Identities = 100/176 (56%), Positives = 137/176 (77%), Gaps = 1/176 (0%)
Frame = +2
Query: 191 KPICLIILGMAGAGKTSFTRRLSNKVINGSRP-YLVNLDPACREVPYPANIDIRDTVDYK 367
KP +I++GMAG+GKT+F ++L+ + + ++P Y++NLDPA R +PY ANIDIRDT++YK
Sbjct: 7 KPCAIIVVGMAGSGKTTFMQQLNAHLHSKNKPPYILNLDPAVRNLPYEANIDIRDTINYK 66
Query: 368 EVMKQYGLGPNGGIVTALNLFSTKFGQVVDLIEKAGKKHKYCVIDTPGQIEVFTWSASGT 547
EVMKQY LGPNGGI+T+LNLF TKF QV+ ++EK + +IDTPGQIE+F WSASG+
Sbjct: 67 EVMKQYNLGPNGGIMTSLNLFVTKFDQVLKILEKRAPTVDHILIDTPGQIEIFQWSASGS 126
Query: 548 IVTETLASCCPTVVVYVMDTVRSVSPVTFMSNMLYACSILYKTRLPFYCCHE*NRC 715
I+ +TLAS PT + YV+DT R+ S T+MS+MLYACS+LYK +LP + N+C
Sbjct: 127 IICDTLASSWPTCIAYVVDTPRATSTSTWMSSMLYACSMLYKAKLPLIIVY--NKC 180
>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 315
Score = 80.6 bits (190), Expect = 2e-16
Identities = 51/169 (30%), Positives = 85/169 (50%), Gaps = 5/169 (2%)
Frame = +2
Query: 194 PICLIILGMAGAGKTSFTRRLSNKVIN-GSRPYLVNLDPACREVPYPANIDIRDTVDYKE 370
P C +++G G+GK+++ + + G +VNLDPA + YP IDIR +D +
Sbjct: 2 PFCQVVVGPPGSGKSTYCFGMYQLLSAIGRSSIIVNLDPANDFIKYPCAIDIRKVLDVEM 61
Query: 371 VMKQYGLGPNGGIVTALNLFSTKFGQVVDLIEKAGKKHK--YCVIDTPGQIEVFTWSASG 544
+ K Y LGPNG ++ A+ V+ + K KKH+ Y + D PGQ+E+FT S
Sbjct: 62 IQKDYDLGPNGALIYAMEAIEYH----VEWLLKELKKHRDSYVIFDCPGQVELFTNHNSL 117
Query: 545 TIVTETLASCCP--TVVVYVMDTVRSVSPVTFMSNMLYACSILYKTRLP 685
+ +TL V V ++D +P ++S +L + + +P
Sbjct: 118 QKIIKTLEKELDYRPVSVQLVDAYCCTNPSAYVSALLVCLKGMLQLDMP 166
>SPAC4D7.12c |fet5||transcription factor Fet5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 276
Score = 66.9 bits (156), Expect = 3e-12
Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 3/166 (1%)
Frame = +2
Query: 197 ICLIILGMAGAGKTSFTRRLSNKVINGSRP-YLVNLDPACREVPYPANIDIRDTVDYKEV 373
+ + G+A +GK++F L + + + R +LVNLDPA + +DIRD + +V
Sbjct: 4 VAAFVCGVASSGKSTFCGALMSYMKSVGRSCHLVNLDPAAENFEWEPTVDIRDLISIDDV 63
Query: 374 MKQYGLGPNGGIVTALNLFSTKFGQVVDLIEKAGKKHKYCVIDTPGQIEVFTWSASGTIV 553
M++ GPNGG++ + + E Y + D PGQIE++T +
Sbjct: 64 MEELDYGPNGGLIYCFEFLMENLDWLNE--EIGDYDEDYLIFDMPGQIELYTHVPILPAL 121
Query: 554 TETLASCC--PTVVVYVMDTVRSVSPVTFMSNMLYACSILYKTRLP 685
L VY++++ V F + +L A S + +P
Sbjct: 122 IRHLQVTLNFRPCAVYLLESQFLVDRTKFFAGVLSAMSAMVMMEVP 167
>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 31.1 bits (67), Expect = 0.17
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Frame = +2
Query: 203 LIILGMAGAGKTSFTRRLSNKVINGSRPY-LVNLDPACREVPYPANIDI 346
L++ G G+GK+SF+R ++N+++ R ++LDP EV +I +
Sbjct: 334 LMVCGPKGSGKSSFSRYITNRLLQQYRHIAYLDLDPGQPEVVPSGHISL 382
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 200 CLIILGMAGAGKTSFTRRLSNKVINGSR 283
C+II G +GAGKT +R+ + + S+
Sbjct: 128 CIIISGESGAGKTEAAKRIMQYITHVSK 155
>SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core
protein Qcr2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 426
Score = 27.1 bits (57), Expect = 2.7
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 526 EHFYLTWRIDNTVLVFLSRFLYQVYDLSKF 437
EH LT R N L + +R L +V D +KF
Sbjct: 99 EHIILTARFLNEYLEYYARLLAEVVDATKF 128
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 26.6 bits (56), Expect = 3.6
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = -2
Query: 636 INVTGDTLRTVSITYTTTVGQHDASVS--VTIVPDADHVNTS 517
+N T T S+ TTT V+ T+VP HVNT+
Sbjct: 90 MNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPPTTHVNTT 131
>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 392
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +2
Query: 209 ILGMAGAGKTSFTRRLSNKVINGSRPY-LVNLDPACREVPYP 331
I+GM GK++F R ++ V+ Y +DP +V P
Sbjct: 25 IVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVP 66
>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 498
Score = 25.8 bits (54), Expect = 6.2
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +2
Query: 188 NKPICLIILGMAGAGKTSFTRRLSNKVINGSRPYLVNLDPACREV 322
N P+ + +L A G T+F + ++ ++ + +LVN P EV
Sbjct: 49 NWPVSIKLLNTALYGLTTFAAQFNSTTMSPTTSHLVNAYPIGHEV 93
>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 497
Score = 25.8 bits (54), Expect = 6.2
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +2
Query: 38 KLKRSF*FVVIFEVVLWK*LLFICIGSKKRYIGEKMSSD 154
K +S F+++ +++ +LF+C G R +G K +SD
Sbjct: 5 KSLKSLVFILLASQIVF--VLFLCYGKSSRELGVKWNSD 41
>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1369
Score = 25.4 bits (53), Expect = 8.2
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = +2
Query: 578 PTVVVYVMDTVRSVSPVTFMSNMLYACSILYKTRLPFY 691
P VYV V V PV+F+ +L C +LYK PFY
Sbjct: 1105 PINSVYV---VAGVWPVSFV--LLSVCILLYKGLPPFY 1137
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 25.4 bits (53), Expect = 8.2
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 203 LIILGMAGAGKTSFTRRLSNKVINGSRPYLVNLDPACREV 322
+IILG +G GKTS + N+ + + D +EV
Sbjct: 11 VIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEV 50
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,983,951
Number of Sequences: 5004
Number of extensions: 62136
Number of successful extensions: 248
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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