Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc1m14
(721 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U10402-10|AAA19064.1| 355|Caenorhabditis elegans Gro-1 operon g... 224 4e-59
AY052770-1|AAL14109.1| 355|Caenorhabditis elegans GOP-2 protein. 224 4e-59
AL033514-15|CAA22102.1| 272|Caenorhabditis elegans Hypothetical... 76 2e-14
U97196-2|AAB52461.2| 268|Caenorhabditis elegans Hypothetical pr... 74 9e-14
U80445-11|AAB37801.2| 479|Caenorhabditis elegans Hypothetical p... 30 1.4
Z73098-13|CAA97340.2| 246|Caenorhabditis elegans Hypothetical p... 30 1.9
Z48621-11|CAE17932.2| 212|Caenorhabditis elegans Hypothetical p... 29 2.5
U80025-2|AAD32270.3| 806|Caenorhabditis elegans Hypothetical pr... 29 2.5
DQ016970-1|AAY42967.1| 212|Caenorhabditis elegans Rab GTPase GL... 29 2.5
AF039041-7|ABM01867.1| 335|Caenorhabditis elegans G protein, al... 29 2.5
L26987-1|AAA62312.1| 627|Caenorhabditis elegans par-2 protein. 29 3.3
AF106580-1|AAK73890.3| 582|Caenorhabditis elegans Abnormal embr... 29 3.3
AF101313-1|AAC69223.1| 1802|Caenorhabditis elegans Abc transport... 29 4.4
Z46934-12|CAA87044.3| 539|Caenorhabditis elegans Hypothetical p... 28 5.8
AL110500-4|CAB54484.1| 215|Caenorhabditis elegans Hypothetical ... 28 5.8
AB112930-1|BAD07035.1| 215|Caenorhabditis elegans Rab27 protein. 28 5.8
>U10402-10|AAA19064.1| 355|Caenorhabditis elegans Gro-1 operon gene
protein 2 protein.
Length = 355
Score = 224 bits (548), Expect = 4e-59
Identities = 102/182 (56%), Positives = 139/182 (76%), Gaps = 1/182 (0%)
Frame = +2
Query: 146 SSDTNKPEGSNAEPNKPICLIILGMAGAGKTSFTRRLSNKV-INGSRPYLVNLDPACREV 322
S + + G N KP +++LGMAG+GKT+F +RL+ + + PY++NLDPA +V
Sbjct: 16 SEEPSPQTGPNVN-QKP-SILVLGMAGSGKTTFVQRLTAFLHARKTPPYVINLDPAVSKV 73
Query: 323 PYPANIDIRDTVDYKEVMKQYGLGPNGGIVTALNLFSTKFGQVVDLIEKAGKKHKYCVID 502
PYP N+DIRDTV YKEVMK++G+GPNG I+T LNL T+F +V++LI K C++D
Sbjct: 74 PYPVNVDIRDTVKYKEVMKEFGMGPNGAIMTCLNLMCTRFDKVIELINKRSSDFSVCLLD 133
Query: 503 TPGQIEVFTWSASGTIVTETLASCCPTVVVYVMDTVRSVSPVTFMSNMLYACSILYKTRL 682
TPGQIE FTWSASG+I+T++LAS PTVV+Y++D+ R+ +P TFMSNMLYACSILY+T+L
Sbjct: 134 TPGQIEAFTWSASGSIITDSLASSHPTVVMYIVDSARATNPTTFMSNMLYACSILYRTKL 193
Query: 683 PF 688
PF
Sbjct: 194 PF 195
>AY052770-1|AAL14109.1| 355|Caenorhabditis elegans GOP-2 protein.
Length = 355
Score = 224 bits (548), Expect = 4e-59
Identities = 102/182 (56%), Positives = 139/182 (76%), Gaps = 1/182 (0%)
Frame = +2
Query: 146 SSDTNKPEGSNAEPNKPICLIILGMAGAGKTSFTRRLSNKV-INGSRPYLVNLDPACREV 322
S + + G N KP +++LGMAG+GKT+F +RL+ + + PY++NLDPA +V
Sbjct: 16 SEEPSPQTGPNVN-QKP-SILVLGMAGSGKTTFVQRLTAFLHARKTPPYVINLDPAVSKV 73
Query: 323 PYPANIDIRDTVDYKEVMKQYGLGPNGGIVTALNLFSTKFGQVVDLIEKAGKKHKYCVID 502
PYP N+DIRDTV YKEVMK++G+GPNG I+T LNL T+F +V++LI K C++D
Sbjct: 74 PYPVNVDIRDTVKYKEVMKEFGMGPNGAIMTCLNLMCTRFDKVIELINKRSSDFSVCLLD 133
Query: 503 TPGQIEVFTWSASGTIVTETLASCCPTVVVYVMDTVRSVSPVTFMSNMLYACSILYKTRL 682
TPGQIE FTWSASG+I+T++LAS PTVV+Y++D+ R+ +P TFMSNMLYACSILY+T+L
Sbjct: 134 TPGQIEAFTWSASGSIITDSLASSHPTVVMYIVDSARATNPTTFMSNMLYACSILYRTKL 193
Query: 683 PF 688
PF
Sbjct: 194 PF 195
>AL033514-15|CAA22102.1| 272|Caenorhabditis elegans Hypothetical
protein Y75B8A.14 protein.
Length = 272
Score = 76.2 bits (179), Expect = 2e-14
Identities = 49/164 (29%), Positives = 84/164 (51%), Gaps = 4/164 (2%)
Frame = +2
Query: 206 IILGMAGAGKTSFTRRLSNKVINGSRPY-LVNLDPACREVPYPANIDIRDTVDYKEVM-- 376
+++G AG+GK+++ + N ++ R +VNLDPAC YPA +D+RD + +V
Sbjct: 6 LVMGPAGSGKSTYCSVMYNHCLSTGRTLRMVNLDPACEVFNYPAVVDVRDLISVNDVQED 65
Query: 377 KQYGLGPNGGIVTALNLFSTKFGQVVDLIEKAGKKHKYCVIDTPGQIEVFTWSASGTIVT 556
++ LGPNG +V + + D +++ + Y VID PGQIE+++ +
Sbjct: 66 EELILGPNGALVFCMEYLVQNLEWLHDELDEG--EDDYFVIDCPGQIELYSHLPVMRQIV 123
Query: 557 ETLASCCPTVV-VYVMDTVRSVSPVTFMSNMLYACSILYKTRLP 685
+ L S V V+++DT + F+S L A S + P
Sbjct: 124 DALKSWDFNVCSVFLIDTNFVLDAEKFISGALTALSAMVAIETP 167
>U97196-2|AAB52461.2| 268|Caenorhabditis elegans Hypothetical
protein B0207.6 protein.
Length = 268
Score = 74.1 bits (174), Expect = 9e-14
Identities = 46/167 (27%), Positives = 81/167 (48%), Gaps = 2/167 (1%)
Frame = +2
Query: 203 LIILGMAGAGKTSFTRRLSNKVINGSRPYL-VNLDPACREVPYPANIDIRDTVDYKEVMK 379
++++G GAGK++F L++ RP+L +NLDPA + Y +++I + + +VM
Sbjct: 4 VLVIGAPGAGKSTFCAGLTDIFSQTKRPFLTINLDPANDTMAYAPDVNITEMITVNDVMD 63
Query: 380 QYGLGPNGGIVTALNLFSTKFGQVVDLIEKAGKKHKYCVIDTPGQIEVFTWSASGTIVTE 559
+ GLGPNG + + ++ IE K KY +ID PGQ+E++ V
Sbjct: 64 RLGLGPNGALKYCIETLGANCNWLLQKIEANHK--KYLIIDCPGQLELYKSEGELWKVIR 121
Query: 560 TL-ASCCPTVVVYVMDTVRSVSPVTFMSNMLYACSILYKTRLPFYCC 697
L S +++ D++ P F+S L + + +P C
Sbjct: 122 FLEKSGVRLCALHLADSLYCSDPSKFISVALSTLATMVTMEMPQVNC 168
>U80445-11|AAB37801.2| 479|Caenorhabditis elegans Hypothetical
protein C50F2.8 protein.
Length = 479
Score = 30.3 bits (65), Expect = 1.4
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 2/114 (1%)
Frame = +2
Query: 203 LIILGMAGAGKTSFTRRLSNKVINGSRPYLVNLDPACREVPYPANIDIRDTVDYKEVMKQ 382
L++LG G G+ R + + ++ + Y + P P ++ R+ Y+ V K+
Sbjct: 286 LVLLGAVGTGR----RDIKSMLLRLAPHYFSTIVPLTSRAQRPGEVEGRE---YQFVRKE 338
Query: 383 --YGLGPNGGIVTALNLFSTKFGQVVDLIEKAGKKHKYCVIDTPGQIEVFTWSA 538
Y GG+V L S +G D + + + CV+D Q + ++A
Sbjct: 339 EIYQKIREGGMVEWGELDSQLYGTSADSVRNEIRSGRMCVLDAAPQSVNYLYNA 392
>Z73098-13|CAA97340.2| 246|Caenorhabditis elegans Hypothetical
protein T21C9.13 protein.
Length = 246
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = -2
Query: 252 RRVKEVFPAPAIPKIIKQMGLLGSAFEPSGLFVSEDIFSPMYLFLEPMQMNNS 94
R+ +F + +++ L+ A SG+F+ +F P+Y+FL M N +
Sbjct: 102 RKKNNIFDEAFLTRVVIVQWLILLAILFSGVFLYRRLFMPLYIFLAVMATNGT 154
>Z48621-11|CAE17932.2| 212|Caenorhabditis elegans Hypothetical
protein R07B1.12 protein.
Length = 212
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +2
Query: 203 LIILGMAGAGKTSFTRRLSNKVINGSRPYLVNLDPACREVPYPAN 337
++++G G GKTS RR + V + + + +D A + +P N
Sbjct: 14 VLVIGDPGVGKTSIIRRFVHNVFSSNYKTTIGVDFALKILPVDEN 58
>U80025-2|AAD32270.3| 806|Caenorhabditis elegans Hypothetical
protein F02C9.2 protein.
Length = 806
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +1
Query: 469 SGKETQVLCYRYARSNRSVHMVSIRHNSDRNTGVMLSHSRS 591
+G ETQVLCY+ R+ +V + H+ D + L H+ S
Sbjct: 213 NGNETQVLCYKMKRA--AVQQGLVHHDPDVDAIYRLQHADS 251
>DQ016970-1|AAY42967.1| 212|Caenorhabditis elegans Rab GTPase GLO-1
protein.
Length = 212
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +2
Query: 203 LIILGMAGAGKTSFTRRLSNKVINGSRPYLVNLDPACREVPYPAN 337
++++G G GKTS RR + V + + + +D A + +P N
Sbjct: 14 VLVIGDPGVGKTSIIRRFVHNVFSSNYKTTIGVDFALKILPVDEN 58
>AF039041-7|ABM01867.1| 335|Caenorhabditis elegans G protein, alpha
subunit protein 18 protein.
Length = 335
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +2
Query: 194 PICLIILGMAGAGKTSFTRRL 256
PI ++LG GAGKTSF R++
Sbjct: 11 PIRTLVLGCMGAGKTSFIRQM 31
>L26987-1|AAA62312.1| 627|Caenorhabditis elegans par-2 protein.
Length = 627
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 197 ICLIILGMAGAGKTSFTRRLSNKVINGS 280
I L++ G +GAGKT+F R + + G+
Sbjct: 421 ITLVVFGHSGAGKTTFVRAIRQLFLEGT 448
>AF106580-1|AAK73890.3| 582|Caenorhabditis elegans Abnormal
embryonic partitioningof cytoplasm protein 2, isoform b
protein.
Length = 582
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 197 ICLIILGMAGAGKTSFTRRLSNKVINGS 280
I L++ G +GAGKT+F R + + G+
Sbjct: 376 ITLVVFGHSGAGKTTFVRAIRQLFLEGT 403
>AF101313-1|AAC69223.1| 1802|Caenorhabditis elegans Abc transporter
family protein 4 protein.
Length = 1802
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +2
Query: 140 KMSSDTNKPEGSNAEPNKPICLIILGMAGAGKTSFTRRLSNK 265
K + N +G N N C +LG+ GAGKTS + L+ +
Sbjct: 1457 KWYGNFNAVKGVNFHVNSKDCFGLLGVNGAGKTSTFQMLTGE 1498
>Z46934-12|CAA87044.3| 539|Caenorhabditis elegans Hypothetical
protein ZK1320.6 protein.
Length = 539
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +2
Query: 203 LIILGMAGAGKTSFTRRL 256
+++LG+ GAGKTS RRL
Sbjct: 372 VVLLGLDGAGKTSIVRRL 389
>AL110500-4|CAB54484.1| 215|Caenorhabditis elegans Hypothetical
protein Y87G2A.4 protein.
Length = 215
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +2
Query: 197 ICLIILGMAGAGKTSFTRRLSNKVINGSRPYLVNLDPACREVPYPAN 337
I + LG +G GKTSF R ++ G V +D ++V Y ++
Sbjct: 8 IKFLALGDSGVGKTSFLHRYTDNTFTGQFISTVGIDFKEKKVVYKSS 54
>AB112930-1|BAD07035.1| 215|Caenorhabditis elegans Rab27 protein.
Length = 215
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +2
Query: 197 ICLIILGMAGAGKTSFTRRLSNKVINGSRPYLVNLDPACREVPYPAN 337
I + LG +G GKTSF R ++ G V +D ++V Y ++
Sbjct: 8 IKFLALGDSGVGKTSFLHRYTDNTFTGQFISTVGIDFKEKKVVYKSS 54
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,585,175
Number of Sequences: 27780
Number of extensions: 355696
Number of successful extensions: 1075
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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