Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1m14
         (721 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   1.3  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    24   1.3  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    24   1.7  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   5.1  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 430 FNKIWTSRRLDRESGKETQVL 492
           F + W  RRL  + GKET  L
Sbjct: 57  FRQSWVDRRLAFQGGKETLAL 77


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +2

Query: 296 NLDPACREVPYPAN 337
           NLDP+ R++P PAN
Sbjct: 384 NLDPSNRKLPAPAN 397


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 254 LSNKVINGSRPYLVNLDPACREVPYPAN 337
           LSNK I+ +  Y  N +  C+++ Y  N
Sbjct: 85  LSNKTIHNNNNYKYNYNNNCKKLYYNIN 112


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/34 (26%), Positives = 15/34 (44%)
 Frame = +2

Query: 572 CCPTVVVYVMDTVRSVSPVTFMSNMLYACSILYK 673
           C P + V+      S +P+T +    Y C +  K
Sbjct: 36  CSPDLSVFTSPACGSETPLTNIEEKTYQCLLCQK 69


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,878
Number of Sequences: 438
Number of extensions: 4489
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)