Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1m12
         (385 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    27   1.0  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      25   5.4  
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy...    25   5.4  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    24   7.1  
SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||M...    24   9.4  
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    24   9.4  

>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 74   TLSDDCFMREIMEKNNYNTYYKMYDRKLTYVAL 172
            T++D  F++ I+ K  YN YY +YD   T V L
Sbjct: 1615 TVNDFLFLQTILRKI-YNFYYALYDVPTTDVEL 1646


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -3

Query: 215  GPLKSVVFGEYRRSSVPHTSTCDRTFYNT 129
            GP+K   FG YR   +   S  D   Y++
Sbjct: 920  GPVKIACFGSYRTGLMTKNSDLDLVIYSS 948


>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 385

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 191 GEYRRSSVPHTSTCDRTF 138
           G  R +S  +TSTCD++F
Sbjct: 351 GPVRTTSYSYTSTCDKSF 368


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 10/41 (24%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +2

Query: 50  CGQLYGSKTLSDDCFMREIMEK--NNYNTYYKMYDRKLTYV 166
           C   Y   TLS +  +RE+ +K  N++++ +  + +   Y+
Sbjct: 708 CSLKYSLNTLSQEKILRELRDKLQNDHSSIFDAFQKMRNYM 748


>SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 155

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -2

Query: 66  PYSWPHRSMHRYTHVMA 16
           P   P R   RYTHVMA
Sbjct: 78  PIGSPRRGSVRYTHVMA 94


>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -2

Query: 99  LIKQSSDKVFDPYSWPH 49
           L+     K+  PY WPH
Sbjct: 497 LLSSFEQKLHQPYQWPH 513


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,534,406
Number of Sequences: 5004
Number of extensions: 28348
Number of successful extensions: 72
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)