Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1m09
         (387 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog (hedg...    29   1.5  
Z72512-1|CAA96663.2|  326|Caenorhabditis elegans Hypothetical pr...    27   4.6  
Z81508-8|CAI58634.1|  294|Caenorhabditis elegans Hypothetical pr...    26   8.1  
Z73978-3|CAA98293.1|  501|Caenorhabditis elegans Hypothetical pr...    26   8.1  
Z22180-3|CAA80175.1|  228|Caenorhabditis elegans Hypothetical pr...    26   8.1  
U40797-1|AAB37554.2|  250|Caenorhabditis elegans Hypothetical pr...    26   8.1  
AF100307-14|AAC68927.1|  313|Caenorhabditis elegans Hypothetical...    26   8.1  

>U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 6 protein.
          Length = 559

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -1

Query: 333 RFGRLLRSQIRCVPVRKVVPLYLTFAPGCSLN-TRSPMTSHYD 208
           ++ +  R  +R  PVR V P+Y+   P   L+ T  P TS+ D
Sbjct: 96  QYSQYPRFDLRPQPVRPVRPVYIASTPASRLSYTERPQTSYGD 138


>Z72512-1|CAA96663.2|  326|Caenorhabditis elegans Hypothetical
           protein R07B5.3 protein.
          Length = 326

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = +3

Query: 21  VTFCKNFTLMRL-KKFHFKNNCVLFWCFWAPVT 116
           V FC   TL+   +K      C+LF  FW P T
Sbjct: 128 VLFCSTRTLILFNEKNKIYQLCILFLVFWGPAT 160


>Z81508-8|CAI58634.1|  294|Caenorhabditis elegans Hypothetical
           protein F20E11.15 protein.
          Length = 294

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 15  ICVTFCKNFTLMRLKKFHFKNNCVLFWCF 101
           IC TF     +  LKK   KNN ++ +CF
Sbjct: 20  ICSTFSCIMNIFILKKEKLKNNEMVLFCF 48


>Z73978-3|CAA98293.1|  501|Caenorhabditis elegans Hypothetical
           protein ZC302.2a protein.
          Length = 501

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 274 WNHFPYWDAPYLGPKQTAKTPRN 342
           WNH+     P +G  QTA+ P N
Sbjct: 48  WNHYNAVATPPIGVPQTARPPSN 70


>Z22180-3|CAA80175.1|  228|Caenorhabditis elegans Hypothetical
           protein K11H3.2 protein.
          Length = 228

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 180 KPERITRRSDHSAKSSVNVC*VNTRERMLNTMEPLSLLGRTL 305
           KP+R    + H+ KS V V    T  R  N+M    +L RT+
Sbjct: 153 KPKRFASSTQHAKKSFVTVESTRTPWRRSNSMYLEDVLNRTI 194


>U40797-1|AAB37554.2|  250|Caenorhabditis elegans Hypothetical
           protein C28C12.11 protein.
          Length = 250

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = +1

Query: 268 IQWNHFPYWDAPYL 309
           ++W+H+ +WD+ YL
Sbjct: 82  LKWSHYSFWDSMYL 95


>AF100307-14|AAC68927.1|  313|Caenorhabditis elegans Hypothetical
           protein T12B5.1 protein.
          Length = 313

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -1

Query: 342 IAWRFGRLLRSQIRCVPVRKVVPLYLTF 259
           I   F +LL+S+  CVPV+++  LY +F
Sbjct: 134 IVTTFNKLLKSET-CVPVKEIRLLYFSF 160


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,446,455
Number of Sequences: 27780
Number of extensions: 194415
Number of successful extensions: 424
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)