Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc1m08
(259 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom... 28 0.18
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s... 25 1.3
SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|... 25 1.7
SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch... 24 2.9
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 23 5.1
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 23 6.7
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 23 8.9
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 23 8.9
SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc... 23 8.9
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch... 23 8.9
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe... 23 8.9
>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 28.3 bits (60), Expect = 0.18
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 37 DNYSLHNFYNNNRKPLKPTTLHDGNIK-KPVYENI 138
DNYSL F N N P KP+ H +K + ++E++
Sbjct: 112 DNYSLVIFSNQNGIPRKPSAGHTFQMKIRAIFESL 146
>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 657
Score = 25.4 bits (53), Expect = 1.3
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +1
Query: 73 RKP--LKPTTLHDGNIKKPVYENITYVRKLMCKENMPGEHD 189
RKP L +TLH N K+P + M K N+PG +
Sbjct: 133 RKPSSLSSSTLHSVNEKQPNSSISPTIESSMNKVNLPGAEE 173
>SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|chr
3|||Manual
Length = 258
Score = 25.0 bits (52), Expect = 1.7
Identities = 17/54 (31%), Positives = 23/54 (42%)
Frame = +1
Query: 16 YCLCCTMDNYSLHNFYNNNRKPLKPTTLHDGNIKKPVYENITYVRKLMCKENMP 177
+CL CT+ L FY K +K T + K + I + K ENMP
Sbjct: 116 WCLVCTLALIFLTYFYETWTKAVKVTVIFLAQCVKACGKGIKHFLKKW--ENMP 167
>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 24.2 bits (50), Expect = 2.9
Identities = 10/32 (31%), Positives = 15/32 (46%)
Frame = +1
Query: 49 LHNFYNNNRKPLKPTTLHDGNIKKPVYENITY 144
LH YN + LK N +P+++ I Y
Sbjct: 50 LHKHYNQKKGQLKHGVSRQKNKLQPIHKQINY 81
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 23.4 bits (48), Expect = 5.1
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +1
Query: 40 NYSLHNFYNNNRKPLKP 90
NY+ N YN N K KP
Sbjct: 233 NYTRSNAYNKNNKDQKP 249
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 23.0 bits (47), Expect = 6.7
Identities = 9/22 (40%), Positives = 10/22 (45%)
Frame = -1
Query: 70 CCCKNCATNNYP*CSTGNITDA 5
CCC C + P GNI A
Sbjct: 1103 CCCSKCNSTMSPFWWPGNICQA 1124
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 22.6 bits (46), Expect = 8.9
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 58 FYNNNRKPLKPTTLHDGNIKKPVYENI 138
FY NN +KP++ G KP E++
Sbjct: 633 FYLNNWYSVKPSSFTKGLNNKPSLEDV 659
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 22.6 bits (46), Expect = 8.9
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = -1
Query: 82 EVCGCCCKNCATNNY 38
++ G CC+NC NY
Sbjct: 155 QIEGWCCQNCDILNY 169
>SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element
Wtf21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 329
Score = 22.6 bits (46), Expect = 8.9
Identities = 13/48 (27%), Positives = 21/48 (43%)
Frame = +1
Query: 16 YCLCCTMDNYSLHNFYNNNRKPLKPTTLHDGNIKKPVYENITYVRKLM 159
+CL CT+ L FY K +K T + K + + +R+ M
Sbjct: 116 WCLVCTLALIFLTYFYETWVKAVKVTVISLAKCVKVISIGLFNIRREM 163
>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 22.6 bits (46), Expect = 8.9
Identities = 11/35 (31%), Positives = 14/35 (40%)
Frame = -1
Query: 133 FRKPVF*CYHRVTLSA*EVCGCCCKNCATNNYP*C 29
F+ P Y R + GC CKNC + C
Sbjct: 405 FKLPTSCSYCREIIWGLSKRGCVCKNCGFKCHARC 439
>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 22.6 bits (46), Expect = 8.9
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 16 YCLCCTMDNYSLHNFYNNNRKPLKPTTLHDGNIKK 120
+CL CT+ L FY K +K T + N +K
Sbjct: 116 WCLVCTLALIFLTYFYETWTKAVKVTAVGLYNSRK 150
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 847,961
Number of Sequences: 5004
Number of extensions: 14268
Number of successful extensions: 50
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 51555950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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