Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc1m08
(259 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z54270-2|CAA91026.2| 158|Caenorhabditis elegans Hypothetical pr... 28 0.80
Z47075-3|CAA87383.2| 182|Caenorhabditis elegans Hypothetical pr... 28 1.1
Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical pr... 24 1.9
U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical pr... 24 1.9
U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical pr... 24 1.9
U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical pr... 24 1.9
Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical pr... 24 1.9
U64846-9|AAG24117.3| 343|Caenorhabditis elegans Serpentine rece... 27 2.4
U40947-4|AAZ32798.1| 883|Caenorhabditis elegans Anion/bicarbona... 26 3.2
U40947-3|AAZ32797.1| 956|Caenorhabditis elegans Anion/bicarbona... 26 3.2
AY954522-1|AAX34430.1| 936|Caenorhabditis elegans anion transpo... 26 3.2
AY887906-1|AAX34418.1| 956|Caenorhabditis elegans anion transpo... 26 3.2
Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical pr... 26 4.2
Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical pr... 26 4.2
Z32673-1|CAA83585.1| 472|Caenorhabditis elegans transcription f... 25 5.6
U41104-2|AAK18974.3| 304|Caenorhabditis elegans Nuclear hormone... 25 5.6
U41104-1|AAR30202.1| 318|Caenorhabditis elegans Nuclear hormone... 25 5.6
AY204195-1|AAO39198.1| 364|Caenorhabditis elegans nuclear recep... 25 5.6
AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical... 25 5.6
U41263-7|AAC24431.1| 462|Caenorhabditis elegans Hypothetical pr... 25 7.4
Z77134-3|CAB00874.1| 1603|Caenorhabditis elegans Hypothetical pr... 25 9.8
Z66567-4|CAA91493.2| 618|Caenorhabditis elegans Hypothetical pr... 25 9.8
Z22181-4|CAA80182.1| 824|Caenorhabditis elegans Hypothetical pr... 25 9.8
U64846-10|AAW88397.1| 341|Caenorhabditis elegans Serpentine rec... 25 9.8
>Z54270-2|CAA91026.2| 158|Caenorhabditis elegans Hypothetical
protein F11C1.2 protein.
Length = 158
Score = 28.3 bits (60), Expect = 0.80
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 61 YNNNRKPLKPTTLHDGNIKKPVYENITYVRKLM 159
+NNN+K PT+ N++ P YE + ++K M
Sbjct: 85 HNNNQKITIPTSFDSSNVQNP-YEEVKMMQKRM 116
>Z47075-3|CAA87383.2| 182|Caenorhabditis elegans Hypothetical
protein E02H1.6 protein.
Length = 182
Score = 27.9 bits (59), Expect = 1.1
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -2
Query: 141 CDIFVNRFFNVTIV*RCRLER 79
CD+F R+F+V +V RC E+
Sbjct: 89 CDLFPERWFDVVVVLRCPTEK 109
>Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical
protein R13H4.8 protein.
Length = 212
Score = 23.8 bits (49), Expect(2) = 1.9
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = -1
Query: 76 CGCCCKNCAT 47
C CCC+ C T
Sbjct: 93 CCCCCRRCCT 102
Score = 21.8 bits (44), Expect(2) = 1.9
Identities = 7/14 (50%), Positives = 7/14 (50%)
Frame = -1
Query: 70 CCCKNCATNNYP*C 29
CCC C T P C
Sbjct: 107 CCCTRCCTCCRPCC 120
>U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical
protein C04G6.7 protein.
Length = 197
Score = 23.8 bits (49), Expect(2) = 1.9
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = -1
Query: 76 CGCCCKNCAT 47
C CCC+ C T
Sbjct: 93 CCCCCRRCCT 102
Score = 21.8 bits (44), Expect(2) = 1.9
Identities = 7/14 (50%), Positives = 7/14 (50%)
Frame = -1
Query: 70 CCCKNCATNNYP*C 29
CCC C T P C
Sbjct: 107 CCCTRCCTCCRPCC 120
>U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical
protein C27A2.5 protein.
Length = 188
Score = 23.8 bits (49), Expect(2) = 1.9
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = -1
Query: 76 CGCCCKNCAT 47
C CCC+ C T
Sbjct: 92 CCCCCRRCCT 101
Score = 21.8 bits (44), Expect(2) = 1.9
Identities = 7/14 (50%), Positives = 7/14 (50%)
Frame = -1
Query: 70 CCCKNCATNNYP*C 29
CCC C T P C
Sbjct: 106 CCCTRCCTCCRPCC 119
>U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical
protein C04G6.10 protein.
Length = 166
Score = 23.8 bits (49), Expect(2) = 1.9
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = -1
Query: 76 CGCCCKNCAT 47
C CCC+ C T
Sbjct: 92 CCCCCRRCCT 101
Score = 21.8 bits (44), Expect(2) = 1.9
Identities = 7/14 (50%), Positives = 7/14 (50%)
Frame = -1
Query: 70 CCCKNCATNNYP*C 29
CCC C T P C
Sbjct: 106 CCCTRCCTCCRPCC 119
>Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical
protein T01B7.8 protein.
Length = 164
Score = 23.8 bits (49), Expect(2) = 1.9
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = -1
Query: 76 CGCCCKNCAT 47
C CCC+ C T
Sbjct: 91 CCCCCRRCCT 100
Score = 21.8 bits (44), Expect(2) = 1.9
Identities = 7/14 (50%), Positives = 7/14 (50%)
Frame = -1
Query: 70 CCCKNCATNNYP*C 29
CCC C T P C
Sbjct: 105 CCCTRCCTCCRPCC 118
>U64846-9|AAG24117.3| 343|Caenorhabditis elegans Serpentine
receptor, class h protein193 protein.
Length = 343
Score = 26.6 bits (56), Expect = 2.4
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -2
Query: 165 FAHQLANICDIFVNRFFNV 109
FA+ + +I IF NRFFN+
Sbjct: 108 FAYMVISIVSIFENRFFNI 126
>U40947-4|AAZ32798.1| 883|Caenorhabditis elegans Anion/bicarbonate
transporter familyprotein 4, isoform b protein.
Length = 883
Score = 26.2 bits (55), Expect = 3.2
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +3
Query: 18 LPVLHYG*LFVAQFLQQQPQTSQADNV 98
LP H G F + FL QQP SQ + V
Sbjct: 229 LPTSHSGLRFGSSFLPQQPVVSQLEPV 255
>U40947-3|AAZ32797.1| 956|Caenorhabditis elegans Anion/bicarbonate
transporter familyprotein 4, isoform a protein.
Length = 956
Score = 26.2 bits (55), Expect = 3.2
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +3
Query: 18 LPVLHYG*LFVAQFLQQQPQTSQADNV 98
LP H G F + FL QQP SQ + V
Sbjct: 229 LPTSHSGLRFGSSFLPQQPVVSQLEPV 255
>AY954522-1|AAX34430.1| 936|Caenorhabditis elegans anion
transporter ABTS-4b protein.
Length = 936
Score = 26.2 bits (55), Expect = 3.2
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +3
Query: 18 LPVLHYG*LFVAQFLQQQPQTSQADNV 98
LP H G F + FL QQP SQ + V
Sbjct: 229 LPTSHSGLRFGSSFLPQQPVVSQLEPV 255
>AY887906-1|AAX34418.1| 956|Caenorhabditis elegans anion
transporter ABTS-4a protein.
Length = 956
Score = 26.2 bits (55), Expect = 3.2
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +3
Query: 18 LPVLHYG*LFVAQFLQQQPQTSQADNV 98
LP H G F + FL QQP SQ + V
Sbjct: 229 LPTSHSGLRFGSSFLPQQPVVSQLEPV 255
>Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical
protein T01D3.3b protein.
Length = 1011
Score = 25.8 bits (54), Expect = 4.2
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = -1
Query: 82 EVCGCCCK-NCATNNYP*CSTGNITDAY 2
+ CG C +CAT N P C+ +T +
Sbjct: 365 QTCGSACPISCATRNQPRCNERCVTGCF 392
>Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical
protein T01D3.3a protein.
Length = 802
Score = 25.8 bits (54), Expect = 4.2
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = -1
Query: 82 EVCGCCCK-NCATNNYP*CSTGNITDAY 2
+ CG C +CAT N P C+ +T +
Sbjct: 156 QTCGSACPISCATRNQPRCNERCVTGCF 183
>Z32673-1|CAA83585.1| 472|Caenorhabditis elegans transcription
factor protein.
Length = 472
Score = 25.4 bits (53), Expect = 5.6
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = -2
Query: 177 RHIFFAHQLANICDIFVNRFFNVTI 103
RH+F H + +CD +++F V +
Sbjct: 20 RHLFIFHSITALCDHMLSKFVVVEV 44
>U41104-2|AAK18974.3| 304|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 109, isoform a protein.
Length = 304
Score = 25.4 bits (53), Expect = 5.6
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +1
Query: 28 CTMDNYSLHNFYNNNRKPLKPTTLHDGNIKKPVYENITYVRKLM 159
C M N L +YN+ K +T N+ KP Y+N Y R L+
Sbjct: 156 CDMKN--LERYYNSTNFEKKISTEDIENLFKPFYDN--YKRSLL 195
>U41104-1|AAR30202.1| 318|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 109, isoform b protein.
Length = 318
Score = 25.4 bits (53), Expect = 5.6
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +1
Query: 28 CTMDNYSLHNFYNNNRKPLKPTTLHDGNIKKPVYENITYVRKLM 159
C M N L +YN+ K +T N+ KP Y+N Y R L+
Sbjct: 170 CDMKN--LERYYNSTNFEKKISTEDIENLFKPFYDN--YKRSLL 209
>AY204195-1|AAO39198.1| 364|Caenorhabditis elegans nuclear receptor
NHR-109 protein.
Length = 364
Score = 25.4 bits (53), Expect = 5.6
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +1
Query: 28 CTMDNYSLHNFYNNNRKPLKPTTLHDGNIKKPVYENITYVRKLM 159
C M N L +YN+ K +T N+ KP Y+N Y R L+
Sbjct: 216 CDMKN--LERYYNSTNFEKKISTEDIENLFKPFYDN--YKRSLL 255
>AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical
protein Y47D3A.26 protein.
Length = 1205
Score = 25.4 bits (53), Expect = 5.6
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
Frame = +1
Query: 112 IKKPVYENITYVRKLMCK---ENMPGEHD 189
+ +PVY IT VRK++ + +N G+HD
Sbjct: 502 VARPVYNGITGVRKVIEEFKHDNRNGQHD 530
>U41263-7|AAC24431.1| 462|Caenorhabditis elegans Hypothetical
protein T19D12.9 protein.
Length = 462
Score = 25.0 bits (52), Expect = 7.4
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +1
Query: 19 CLCCTMDNYSLHNF 60
C+CCT NY+ NF
Sbjct: 31 CICCTNANYNAINF 44
>Z77134-3|CAB00874.1| 1603|Caenorhabditis elegans Hypothetical
protein R09H10.5 protein.
Length = 1603
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -3
Query: 188 SCSPGIFSLHISLRTYV 138
SC PG++S H RT V
Sbjct: 181 SCPPGLYSAHCEARTCV 197
>Z66567-4|CAA91493.2| 618|Caenorhabditis elegans Hypothetical
protein ZK455.4 protein.
Length = 618
Score = 24.6 bits (51), Expect = 9.8
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = -1
Query: 151 CEHM*Y-FRKPVF*CYHRVTLSA*EVCGCCCKNCATNNYP*CSTGNIT 11
C+++ Y F+ V R + E+CG NC ++ P NIT
Sbjct: 114 CKNIIYAFKDEVVFVLERSVFTPEEICGAFIANCGHSDKPLTHMWNIT 161
>Z22181-4|CAA80182.1| 824|Caenorhabditis elegans Hypothetical
protein ZK632.5 protein.
Length = 824
Score = 24.6 bits (51), Expect = 9.8
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 189 IVLARHIFFAHQLANICDIFVNRFFNVT 106
I+L +HIF A+QLA N F T
Sbjct: 249 IILQKHIFIANQLAEAIQKLKNIFVTGT 276
>U64846-10|AAW88397.1| 341|Caenorhabditis elegans Serpentine
receptor, class h protein194, isoform b protein.
Length = 341
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2
Query: 171 IFFAHQLANICDIFVNRFF 115
I FA+ + +I IF NRFF
Sbjct: 106 ILFAYMVISIVSIFENRFF 124
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,912,725
Number of Sequences: 27780
Number of extensions: 86959
Number of successful extensions: 266
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 12,740,198
effective HSP length: 64
effective length of database: 10,962,278
effective search space used: 230207838
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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