Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1m07
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase Ade2|Sc...    27   3.8  
SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr 3...    27   3.8  
SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha...    26   5.0  
SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual     26   6.6  
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    26   6.6  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    25   8.7  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    25   8.7  

>SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase
           Ade2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -1

Query: 712 NSACISLRVKQSELHPPKCVQFLGGIVVVYL--F*SGVEKVLQ 590
           N       +  S L  PKC   +G  VVVYL  F S +EK+ Q
Sbjct: 59  NGVTYDFHILPSGLVNPKCQNLIGSGVVVYLPAFFSELEKLEQ 101


>SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 555

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = -2

Query: 750 YSLCA*AC*WLP*TALVFRFGSSSPNYTRLSACNFWGASLLSIFFRVA*KKSCNCLLSKR 571
           Y + A  C WL    L+F    +S + +++ A +  G    S+F     KK+ N L +K 
Sbjct: 49  YEVFAPVCMWLDAIDLLFERLKASVDVSKIQAISGAGQQHASVFLLKGSKKALNSLDAKS 108

Query: 570 FL 565
            L
Sbjct: 109 SL 110


>SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 473

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +2

Query: 518 YDYSN-YIEFFSFVRSIKKRFDNRQLQDFFYATL 616
           YD S+ Y+EF   + S++K+ D+ +    FY  L
Sbjct: 83  YDQSSSYVEFRKHLESVEKKADSSKALRIFYIAL 116


>SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 224

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 518 YDYSNYIEFFSFVRSIKK 571
           Y YS Y+E F F R+ KK
Sbjct: 81  YQYSTYLENFVFARNAKK 98


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = +2

Query: 92  YRSANAPAADINDTFLEKISIPRGHRDCCDAKVYETAVREFVEETGR 232
           Y+  NAPAA I DT+ E   +P GHR   + +   T + E +EE  R
Sbjct: 730 YKQLNAPAAAIPDTW-ELCLLP-GHR-IGEPEYLFTRIDESMEEEWR 773


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +2

Query: 554 VRSIKKRFDNRQL--QDFFYATLKKIDNNDAPQKLHALRRV*FGLLDPKRNT 703
           + SI KRF NRQ+  +D     + +I NN    KL+A   +    L   RNT
Sbjct: 415 IASIFKRFQNRQMKNKDARSQFMTEIINNIRSIKLYAWENIFLQKLLQLRNT 466


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +2

Query: 545 FSFVRSIKKRFDNRQLQDFFYATLKKIDNNDAPQKLHALRRV*FGLLDPKRN 700
           FS   SIK R++NR  Q F     K+     +  KL+  R+    ++  KRN
Sbjct: 690 FSEQESIKLRWENRIDQMFTKKFGKRASEWKSSSKLNQARQTILDIIGSKRN 741


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,968,347
Number of Sequences: 5004
Number of extensions: 60251
Number of successful extensions: 161
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)