Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc1m05
(520 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P52813 Cluster: 40S ribosomal protein S3a; n=17; Eukary... 258 7e-68
UniRef50_P61247 Cluster: 40S ribosomal protein S3a; n=209; Eukar... 220 1e-56
UniRef50_A7NWS5 Cluster: Chromosome chr5 scaffold_2, whole genom... 213 2e-54
UniRef50_Q54ZW5 Cluster: 40S ribosomal protein S3A; n=2; Dictyos... 181 1e-44
UniRef50_Q5EMY6 Cluster: 40S ribosomal protein S1-like protein; ... 176 2e-43
UniRef50_UPI000049A095 Cluster: 40S ribosomal protein S3a; n=3; ... 162 5e-39
UniRef50_Q23DE3 Cluster: Ribosomal S3Ae family protein; n=1; Tet... 159 4e-38
UniRef50_Q9U4U0 Cluster: Antigen; n=10; Trypanosomatidae|Rep: An... 154 1e-36
UniRef50_A0CCR3 Cluster: Chromosome undetermined scaffold_168, w... 141 1e-32
UniRef50_UPI000041A636 Cluster: PREDICTED: similar to ribosomal ... 131 8e-30
UniRef50_UPI00005042B8 Cluster: UPI00005042B8 related cluster; n... 120 2e-26
UniRef50_Q7QT21 Cluster: GLP_675_17761_17015; n=1; Giardia lambl... 116 2e-25
UniRef50_UPI00015608D3 Cluster: PREDICTED: similar to ribosomal ... 116 4e-25
UniRef50_A3F4R3 Cluster: Ribosomal protein S3a; n=1; Taenia asia... 102 4e-21
UniRef50_A2FDS0 Cluster: Ribosomal protein S3Ae, putative; n=4; ... 98 1e-19
UniRef50_Q9AW90 Cluster: 40S ribosomal Protein S3a; n=1; Guillar... 83 5e-15
UniRef50_Q8SS05 Cluster: 40S RIBOSOMAL PROTEIN S3A; n=1; Encepha... 79 5e-14
UniRef50_Q0W2K9 Cluster: 30S ribosomal protein S3AE; n=2; Euryar... 70 4e-11
UniRef50_Q8Q0F2 Cluster: 30S ribosomal protein S3Ae; n=6; Euryar... 64 1e-09
UniRef50_O27964 Cluster: 30S ribosomal protein S3Ae; n=1; Archae... 62 6e-09
UniRef50_Q8ZT21 Cluster: 30S ribosomal protein S3Ae; n=4; Pyroba... 61 2e-08
UniRef50_Q3SAA8 Cluster: SSU ribosomal protein S3AE; n=2; enviro... 60 3e-08
UniRef50_A7QAT4 Cluster: Chromosome chr5 scaffold_72, whole geno... 59 5e-08
UniRef50_Q8TVD1 Cluster: 30S ribosomal protein S3Ae; n=1; Methan... 59 7e-08
UniRef50_A7D401 Cluster: Ribosomal protein S3Ae; n=2; Halorubrum... 58 9e-08
UniRef50_Q6LZG0 Cluster: 30S ribosomal protein S3Ae; n=6; Methan... 58 1e-07
UniRef50_Q9YCV8 Cluster: 30S ribosomal protein S3Ae; n=12; Archa... 56 6e-07
UniRef50_A5UKY8 Cluster: Small subunit ribosomal protein S3Ae; n... 52 1e-05
UniRef50_Q5V296 Cluster: 30S ribosomal protein S3Ae; n=4; Haloba... 52 1e-05
UniRef50_A4YCU2 Cluster: Ribosomal protein S3Ae; n=1; Metallosph... 51 1e-05
UniRef50_A4GI78 Cluster: Ribosomal protein S3AE; n=1; uncultured... 51 2e-05
UniRef50_A2SQ57 Cluster: Ribosomal protein S3Ae; n=1; Methanocor... 48 1e-04
UniRef50_Q3LW71 Cluster: Ribosomal protein S3a; n=1; Bigelowiell... 46 5e-04
UniRef50_A0RTS7 Cluster: Ribosomal protein S3AE; n=2; Thermoprot... 46 5e-04
UniRef50_A4D1I1 Cluster: Similar to ribosomal protein S3a; 40S r... 42 0.011
UniRef50_Q6KYU3 Cluster: 30S ribosomal protein S3Ae; n=2; Thermo... 40 0.045
UniRef50_Q978Z2 Cluster: 30S ribosomal protein S3Ae; n=2; Thermo... 38 0.18
UniRef50_Q4SVA9 Cluster: Chromosome undetermined SCAF13769, whol... 34 2.2
UniRef50_A0YI31 Cluster: DNA mismatch repair protein; n=5; Cyano... 33 3.9
UniRef50_Q0KDB8 Cluster: L-Amino-acid oxidase; n=3; cellular org... 33 5.2
UniRef50_Q01HQ6 Cluster: OSIGBa0153E02-OSIGBa0093I20.19 protein;... 32 6.8
UniRef50_Q7N7R8 Cluster: Hypothetical gene; n=1; Photorhabdus lu... 32 9.0
UniRef50_A0W872 Cluster: Putative uncharacterized protein; n=1; ... 32 9.0
>UniRef50_P52813 Cluster: 40S ribosomal protein S3a; n=17;
Eukaryota|Rep: 40S ribosomal protein S3a - Anopheles
gambiae (African malaria mosquito)
Length = 269
Score = 258 bits (631), Expect = 7e-68
Identities = 118/145 (81%), Positives = 133/145 (91%)
Frame = +2
Query: 86 IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDA 265
+VDPFTRKDWYDVKAP+MF RQVG TLVNRTQGTKIAS+GLKGRVFEVSLADLQ + DA
Sbjct: 21 VVDPFTRKDWYDVKAPNMFKNRQVGKTLVNRTQGTKIASDGLKGRVFEVSLADLQNEPDA 80
Query: 266 ERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 445
ERSFRKF+L+AE V GR+VL NFHGM LTTDKLR MVKKWQTLIE ++DVKTTDG++LRV
Sbjct: 81 ERSFRKFKLVAESVNGRDVLTNFHGMALTTDKLRSMVKKWQTLIECSVDVKTTDGFMLRV 140
Query: 446 FCIGFTNKDSLSQRKTCYAQHTQVR 520
FCIGFT KDS+SQRKTCYAQH+Q++
Sbjct: 141 FCIGFTIKDSMSQRKTCYAQHSQIK 165
>UniRef50_P61247 Cluster: 40S ribosomal protein S3a; n=209;
Eukaryota|Rep: 40S ribosomal protein S3a - Homo sapiens
(Human)
Length = 264
Score = 220 bits (538), Expect = 1e-56
Identities = 104/145 (71%), Positives = 122/145 (84%)
Frame = +2
Query: 86 IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDA 265
+VDPF++KDWYDVKAP+MF+ R +G TLV RTQGTKIAS+GLKGRVFEVSLADLQ D
Sbjct: 21 VVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQND--- 77
Query: 266 ERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 445
E +FRKF+LI E VQG+N L NFHGMDLT DK+ MVKKWQT+IEA++DVKTTDGY+LR+
Sbjct: 78 EVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRL 137
Query: 446 FCIGFTNKDSLSQRKTCYAQHTQVR 520
FC+GFT K + RKT YAQH QVR
Sbjct: 138 FCVGFTKKRNNQIRKTSYAQHQQVR 162
>UniRef50_A7NWS5 Cluster: Chromosome chr5 scaffold_2, whole genome
shotgun sequence; n=3; core eudicotyledons|Rep:
Chromosome chr5 scaffold_2, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 656
Score = 213 bits (520), Expect = 2e-54
Identities = 101/143 (70%), Positives = 117/143 (81%)
Frame = +2
Query: 92 DPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAER 271
DPF +KDWYD+KAPS+F R VG TLV+RTQGTKIASEGLK RVFE+SLADLQAD D +
Sbjct: 417 DPFAKKDWYDIKAPSVFEVRNVGKTLVSRTQGTKIASEGLKHRVFEISLADLQADED--Q 474
Query: 272 SFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 451
++RK RL AE VQGRNVL NF GMD TTDKLR +V+KWQTLIEA++DVKTTD Y LR+FC
Sbjct: 475 AYRKIRLRAEDVQGRNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRLFC 534
Query: 452 IGFTNKDSLSQRKTCYAQHTQVR 520
I FT K +KTCYAQ +Q+R
Sbjct: 535 IAFTKKRVNQNKKTCYAQSSQIR 557
>UniRef50_Q54ZW5 Cluster: 40S ribosomal protein S3A; n=2;
Dictyostelium discoideum|Rep: 40S ribosomal protein S3A
- Dictyostelium discoideum AX4
Length = 273
Score = 181 bits (440), Expect = 1e-44
Identities = 90/148 (60%), Positives = 113/148 (76%), Gaps = 4/148 (2%)
Frame = +2
Query: 89 VDPFTRKDWYDVKAPSMFSK----RQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQAD 256
VDPFTRK+WY V+AP+ F K +VG T VNRTQGTK+AS+GLKGRV+EVSLAD++
Sbjct: 16 VDPFTRKEWYVVRAPTQFFKSPADNKVGFTPVNRTQGTKLASDGLKGRVYEVSLADMK-- 73
Query: 257 TDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYV 436
D + FRK +L AE V+GRNVL NF+GMDLT+DKLR ++ KW TLIE +DVKTTDGY
Sbjct: 74 DDESQVFRKIKLRAEEVEGRNVLTNFYGMDLTSDKLRSLIHKWSTLIECFVDVKTTDGYF 133
Query: 437 LRVFCIGFTNKDSLSQRKTCYAQHTQVR 520
LRVF I FT K ++KT YA+ ++V+
Sbjct: 134 LRVFAICFTKKGESQKKKTSYAKTSRVK 161
>UniRef50_Q5EMY6 Cluster: 40S ribosomal protein S1-like protein;
n=9; Dikarya|Rep: 40S ribosomal protein S1-like protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 256
Score = 176 bits (429), Expect = 2e-43
Identities = 83/143 (58%), Positives = 106/143 (74%)
Frame = +2
Query: 92 DPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAER 271
DPF RKDWY +KAP+ F+ R VG TLVNR+ G K A++ LKGR+FEVSLADLQ D D
Sbjct: 22 DPFARKDWYGIKAPAPFNIRDVGKTLVNRSSGMKNANDALKGRIFEVSLADLQKDED--H 79
Query: 272 SFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 451
+FRK +L + VQG+N L NFHG+D T+DKLR +V+KWQ+LIEAN+ VKTTD Y+LR+F
Sbjct: 80 AFRKIKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFA 139
Query: 452 IGFTNKDSLSQRKTCYAQHTQVR 520
I T + +KT YA +Q+R
Sbjct: 140 IAVTKRRPNQIKKTTYAASSQIR 162
>UniRef50_UPI000049A095 Cluster: 40S ribosomal protein S3a; n=3;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S3a - Entamoeba histolytica HM-1:IMSS
Length = 257
Score = 162 bits (393), Expect = 5e-39
Identities = 77/145 (53%), Positives = 105/145 (72%)
Frame = +2
Query: 86 IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDA 265
I +PF++K+WY+VK P F +R VG +VN+T GT+IASE LKGRV EV+LADL +
Sbjct: 22 IAEPFSKKEWYNVKVPKNFKRRTVGQIVVNKTAGTRIASEQLKGRVVEVNLADLMENEKF 81
Query: 266 ERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 445
KF+ E V G++ L FHG+ LTTDKLR +VKKW TLIE ++DVKTTDG+++R+
Sbjct: 82 GAYNYKFK--CEDVNGKDCLMIFHGLKLTTDKLRSIVKKWCTLIETSVDVKTTDGHLIRI 139
Query: 446 FCIGFTNKDSLSQRKTCYAQHTQVR 520
FCIGFT++ S +KT YA+ Q++
Sbjct: 140 FCIGFTSRKSNQIKKTSYAKSAQIK 164
>UniRef50_Q23DE3 Cluster: Ribosomal S3Ae family protein; n=1;
Tetrahymena thermophila SB210|Rep: Ribosomal S3Ae family
protein - Tetrahymena thermophila SB210
Length = 265
Score = 159 bits (386), Expect = 4e-38
Identities = 73/147 (49%), Positives = 104/147 (70%), Gaps = 3/147 (2%)
Frame = +2
Query: 89 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 268
+DP +RK+WYD +AP FS + G TLV ++ G +IASE +KGRV E +LADL+ D +
Sbjct: 23 IDPLSRKEWYDFRAPIPFSSKSFGKTLVTKSSGNRIASEEIKGRVVESTLADLK-DNSND 81
Query: 269 RSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 448
+++RK +L+ + V GRN +F+G+D+T D+L M++KWQTLIEA +D KT DGY++RVF
Sbjct: 82 KAWRKVKLVIDEVDGRNAKTSFYGLDITRDRLCSMIRKWQTLIEARVDCKTNDGYIIRVF 141
Query: 449 CIGFTNKDSL---SQRKTCYAQHTQVR 520
+ FT K S S TCYA+ +QVR
Sbjct: 142 TLAFTKKTSAGKQSSTSTCYAKSSQVR 168
>UniRef50_Q9U4U0 Cluster: Antigen; n=10; Trypanosomatidae|Rep:
Antigen - Leishmania major
Length = 264
Score = 154 bits (373), Expect = 1e-36
Identities = 66/143 (46%), Positives = 96/143 (67%)
Frame = +2
Query: 92 DPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAER 271
+ RK+WYDV AP+ F KRQ T+ N+TQGT+IA++ L+GRVFE +LADL E
Sbjct: 23 ETMARKEWYDVVAPANFEKRQFAKTICNKTQGTRIAADVLRGRVFEANLADLNQSAGEEE 82
Query: 272 SFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 451
++RK R + VQGRN+L FH M++TTDK+ +++KW T +E ++VKT DGY +R+F
Sbjct: 83 AYRKVRFTVQEVQGRNLLTQFHSMEVTTDKMANLLRKWCTTMETTVEVKTADGYTMRLFV 142
Query: 452 IGFTNKDSLSQRKTCYAQHTQVR 520
+ FT + Q + CYA+ V+
Sbjct: 143 VAFTKPQANQQSRNCYAKQRLVK 165
>UniRef50_A0CCR3 Cluster: Chromosome undetermined scaffold_168,
whole genome shotgun sequence; n=4; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_168,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 291
Score = 141 bits (341), Expect = 1e-32
Identities = 64/144 (44%), Positives = 97/144 (67%)
Frame = +2
Query: 89 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 268
+DP RK+W+++ AP F+ G T +N++ GT +A+E +KGRV E SLADLQ +D +
Sbjct: 19 IDPLARKEWFELTAPVPFAAGGFGYTCINKSAGTVVATEAIKGRVVEASLADLQGQSD-Q 77
Query: 269 RSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 448
++RK +LI + V+G +F+G+D T DK+ M+KK QTLIE ++ ++ DGY+LR+F
Sbjct: 78 MAWRKVKLIIDDVEGTRCRTSFYGLDSTKDKIFGMIKKRQTLIETQVEARSQDGYILRIF 137
Query: 449 CIGFTNKDSLSQRKTCYAQHTQVR 520
I FT QRKT YAQ +Q++
Sbjct: 138 VIAFTKSIKNQQRKTTYAQRSQIK 161
>UniRef50_UPI000041A636 Cluster: PREDICTED: similar to ribosomal
protein S3a isoform 5; n=18; Eutheria|Rep: PREDICTED:
similar to ribosomal protein S3a isoform 5 - Homo
sapiens
Length = 211
Score = 131 bits (317), Expect = 8e-30
Identities = 68/114 (59%), Positives = 85/114 (74%)
Frame = +2
Query: 86 IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDA 265
+VDPF++KDWYDV AP+MF+ R +G TLV RTQGTKIAS+ GRVFEVSLADLQ D
Sbjct: 21 VVDPFSKKDWYDVNAPAMFNIRNIGKTLVTRTQGTKIASD---GRVFEVSLADLQND--- 74
Query: 266 ERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTD 427
E +FRKF+LI E VQG+N L NFHG+DLT+DK+ ++K I +V+T D
Sbjct: 75 EVAFRKFKLITEDVQGKNCLTNFHGVDLTSDKITSQIRKKMMEIMTR-EVQTND 127
>UniRef50_UPI00005042B8 Cluster: UPI00005042B8 related cluster; n=1;
Rattus norvegicus|Rep: UPI00005042B8 UniRef100 entry -
Rattus norvegicus
Length = 237
Score = 120 bits (289), Expect = 2e-26
Identities = 70/139 (50%), Positives = 91/139 (65%), Gaps = 1/139 (0%)
Frame = +2
Query: 104 RKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRK 283
+KD YDVKA +MF+ R +G T V R Q TK+ S GL G VFE SLA LQ D + RK
Sbjct: 12 KKDRYDVKALTMFNVRNIGKTQVLRKQETKMVSVGLNGLVFEASLASLQND---KVVVRK 68
Query: 284 FRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGF- 460
F+LI E ++G+N L N +GMDLT DK V KWQ ++EA+ DVKT D Y+L +FC+G+
Sbjct: 69 FKLITEDMRGKNGLTNSYGMDLTWDKRCNKVIKWQ-MVEAHADVKTADYYLLCLFCVGYT 127
Query: 461 TNKDSLSQRKTCYAQHTQV 517
TN + R+ AQ+ QV
Sbjct: 128 TNVTTRYARQLVCAQYQQV 146
>UniRef50_Q7QT21 Cluster: GLP_675_17761_17015; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_675_17761_17015 - Giardia lamblia
ATCC 50803
Length = 248
Score = 116 bits (280), Expect = 2e-25
Identities = 55/143 (38%), Positives = 83/143 (58%)
Frame = +2
Query: 92 DPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAER 271
DP+ +K+WY V AP+ F R +G T V +T G ++A++ + RV+EV+L DL +
Sbjct: 20 DPYLKKEWYPVIAPAHFKSRHIGQTPVTKTAGLRVATDVINHRVYEVNLGDLNPGAEDLN 79
Query: 272 SFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 451
KF L + V L NFHGMD+T K + +K I+ +D+ TTDGY+LRVF
Sbjct: 80 GNTKFYLQTQLVSDGKCLTNFHGMDITRHKYGSLFRKGCDCIDVFMDIPTTDGYLLRVFV 139
Query: 452 IGFTNKDSLSQRKTCYAQHTQVR 520
I FT++ +RK C+ + +R
Sbjct: 140 IAFTDRFRFQRRKNCHVKGRVIR 162
>UniRef50_UPI00015608D3 Cluster: PREDICTED: similar to ribosomal
protein S3a; n=1; Equus caballus|Rep: PREDICTED: similar
to ribosomal protein S3a - Equus caballus
Length = 153
Score = 116 bits (278), Expect = 4e-25
Identities = 57/90 (63%), Positives = 69/90 (76%)
Frame = +2
Query: 89 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 268
VD ++KDWYD+KAP+MF+ R +G TLV RTQGTKIAS+GLKG VFE+SLADLQ D E
Sbjct: 22 VDQISKKDWYDMKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGGVFEMSLADLQND---E 78
Query: 269 RSFRKFRLIAEYVQGRNVLCNFHGMDLTTD 358
+FRKF+LI E VQG+ L NF M L+ D
Sbjct: 79 VAFRKFKLITEDVQGKRCLINFRSMGLSCD 108
>UniRef50_A3F4R3 Cluster: Ribosomal protein S3a; n=1; Taenia
asiatica|Rep: Ribosomal protein S3a - Taenia asiatica
(Asian tapeworm)
Length = 183
Score = 102 bits (245), Expect = 4e-21
Identities = 50/82 (60%), Positives = 59/82 (71%)
Frame = +2
Query: 275 FRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCI 454
FRKF+L E VQGR+ L NFHGMDLT DKL MV KWQ+ IEA++DVKTTDGY LR F I
Sbjct: 7 FRKFKLQVEDVQGRHCLTNFHGMDLTHDKLCGMVLKWQSTIEAHVDVKTTDGYTLRFFVI 66
Query: 455 GFTNKDSLSQRKTCYAQHTQVR 520
FT K Q+ YAQ T+++
Sbjct: 67 AFTKKQE-DQKSHAYAQTTRIK 87
>UniRef50_A2FDS0 Cluster: Ribosomal protein S3Ae, putative; n=4;
Trichomonas vaginalis G3|Rep: Ribosomal protein S3Ae,
putative - Trichomonas vaginalis G3
Length = 247
Score = 97.9 bits (233), Expect = 1e-19
Identities = 53/144 (36%), Positives = 83/144 (57%), Gaps = 1/144 (0%)
Frame = +2
Query: 92 DPFTRKDWYDVKAPSMFS-KRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 268
D F +K+W V P+ F+ KR +G T+ N+ ++ + + RV+E+S AD+ D
Sbjct: 18 DSFIKKEWRHVLVPAYFTGKRDIGVTVSNKCARGRVPMDYVNNRVWELSHADMVNDLSHA 77
Query: 269 RSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 448
+R IA G V F GM LT DKL +++K++T+I+A++D KT DG++LR+F
Sbjct: 78 YRLFSWRSIAA---GSEVYTQFAGMRLTHDKLDSIMRKYRTMIDASVDAKTADGFILRLF 134
Query: 449 CIGFTNKDSLSQRKTCYAQHTQVR 520
IGFT K + S + YA + R
Sbjct: 135 TIGFTKKLANSHKNHTYANSHKAR 158
>UniRef50_Q9AW90 Cluster: 40S ribosomal Protein S3a; n=1; Guillardia
theta|Rep: 40S ribosomal Protein S3a - Guillardia theta
(Cryptomonas phi)
Length = 219
Score = 82.6 bits (195), Expect = 5e-15
Identities = 45/143 (31%), Positives = 73/143 (51%)
Frame = +2
Query: 92 DPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAER 271
D +R++ V AP +F + +G TL+ + + + ++++VSLAD+ E
Sbjct: 19 DVNSRQELIKVYAPDIFDSKLIGKTLIKKRNPAD-ENSSVDNKIYQVSLADILGKE--EF 75
Query: 272 SFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 451
S F + + FHG+ LT DK+ ++KKW TLIE ++ KT DGY L++F
Sbjct: 76 SSINFNFKSLKIFNNECFTKFHGLTLTRDKICSLIKKWHTLIEVEVNFKTKDGYFLKLFL 135
Query: 452 IGFTNKDSLSQRKTCYAQHTQVR 520
I + K + KT Y +Q R
Sbjct: 136 IAQSKKPKNMKSKTVYINSSQKR 158
>UniRef50_Q8SS05 Cluster: 40S RIBOSOMAL PROTEIN S3A; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S3A
- Encephalitozoon cuniculi
Length = 189
Score = 79.4 bits (187), Expect = 5e-14
Identities = 41/99 (41%), Positives = 58/99 (58%)
Frame = +2
Query: 215 GRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTL 394
GR ++V+ ADL + D RKF ++G + F GM+LT+DK + M+KKW TL
Sbjct: 15 GRRYDVNQADLTGNNDV--GHRKFIFKIGDIKGSECVGFFDGMELTSDKHKAMIKKWHTL 72
Query: 395 IEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHT 511
IEA D+ DG V RVF +G T + +KTCY +H+
Sbjct: 73 IEAQKDIVAKDGSVFRVFVMGVTRRHPGYVKKTCYVKHS 111
>UniRef50_Q0W2K9 Cluster: 30S ribosomal protein S3AE; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S3AE -
Uncultured methanogenic archaeon RC-I
Length = 225
Score = 69.7 bits (163), Expect = 4e-11
Identities = 46/127 (36%), Positives = 68/127 (53%)
Frame = +2
Query: 89 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 268
VD F K+WY V AP+ F++ +G TL + G I GRV E +L D+ D +
Sbjct: 9 VDAFRAKNWYQVIAPAEFNRANIGETLAD-DPGKMI------GRVMESTLGDVTGDWTKQ 61
Query: 269 RSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 448
FR+ E + G + +F G +LT D +R +VK+ + I+AN+ V T DG+ +RV
Sbjct: 62 NIKMIFRI--EEIGGNSAYTSFLGHELTRDYMRSLVKRRTSKIDANVVVTTKDGFKVRVK 119
Query: 449 CIGFTNK 469
I T K
Sbjct: 120 PIVLTVK 126
>UniRef50_Q8Q0F2 Cluster: 30S ribosomal protein S3Ae; n=6;
Euryarchaeota|Rep: 30S ribosomal protein S3Ae -
Methanosarcina mazei (Methanosarcina frisia)
Length = 204
Score = 64.5 bits (150), Expect = 1e-09
Identities = 43/133 (32%), Positives = 71/133 (53%)
Frame = +2
Query: 89 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 268
+D + K+WY+++AP+ ++ VGTT+ L GR E ++ +L D
Sbjct: 10 LDGWKSKEWYNIEAPAYLNRVIVGTTMAGDPSL-------LVGRNVETTVGELT--NDMT 60
Query: 269 RSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 448
++ K L V G + G +LTTD +R +VK+ + I+AN+DV+T DG+V+RV
Sbjct: 61 KNNTKVILRVNNVVGDIATTDLMGHELTTDYVRSIVKRQTSRIDANVDVRTKDGFVIRVK 120
Query: 449 CIGFTNKDSLSQR 487
FT K + S +
Sbjct: 121 PTCFTIKRARSSQ 133
>UniRef50_O27964 Cluster: 30S ribosomal protein S3Ae; n=1;
Archaeoglobus fulgidus|Rep: 30S ribosomal protein S3Ae -
Archaeoglobus fulgidus
Length = 211
Score = 62.5 bits (145), Expect = 6e-09
Identities = 42/145 (28%), Positives = 69/145 (47%), Gaps = 1/145 (0%)
Frame = +2
Query: 86 IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDA 265
+ D +T K W+ + AP F ++G T + +K+ GR E +LA+L D
Sbjct: 10 VKDKWTLKKWFTLIAPEYFGMAELGETPAD--DASKVV-----GRTVETTLAELTNDYSN 62
Query: 266 ERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 445
+ +++K V G N F +LT + L + ++ + IE +DV T DGY LRV
Sbjct: 63 QNTYKKLIFKVYRVAGDNAYTKFWRFELTREYLNSLTRRRTSKIEDIVDVTTADGYKLRV 122
Query: 446 FCIGFT-NKDSLSQRKTCYAQHTQV 517
+ FT + SQ++ A Q+
Sbjct: 123 KSVVFTVRRCKTSQKRAIRAIMRQI 147
>UniRef50_Q8ZT21 Cluster: 30S ribosomal protein S3Ae; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S3Ae -
Pyrobaculum aerophilum
Length = 221
Score = 60.9 bits (141), Expect = 2e-08
Identities = 41/124 (33%), Positives = 59/124 (47%)
Frame = +2
Query: 92 DPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAER 271
DP+ K W+ V APS + N Q L R EVSL D+ D
Sbjct: 20 DPWALKKWFSVYAPSYLGGVFLAEVPANEAQK-------LLMRTLEVSLYDITKDISHLP 72
Query: 272 SFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 451
KF++ V+G L F G++LT D +R +V+K + + A +VKT DG V+R+
Sbjct: 73 IKLKFQI--HRVEGLKALTRFKGLELTRDYIRSLVRKGTSKVTAITEVKTKDGMVMRIAV 130
Query: 452 IGFT 463
+G T
Sbjct: 131 LGIT 134
>UniRef50_Q3SAA8 Cluster: SSU ribosomal protein S3AE; n=2;
environmental samples|Rep: SSU ribosomal protein S3AE -
uncultured euryarchaeote Alv-FOS1
Length = 227
Score = 60.1 bits (139), Expect = 3e-08
Identities = 41/134 (30%), Positives = 67/134 (50%)
Frame = +2
Query: 92 DPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAER 271
D + K WY + P FS +++G T + K+ GRV E +L DL +
Sbjct: 15 DKWRSKVWYTIITPETFSSKEIGMTPADDPD--KVI-----GRVAESTLYDLSGNFKKMH 67
Query: 272 SFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 451
F++ VQG N F G D+TTD +R M+++ ++ I+ +V+T+DGY +RV
Sbjct: 68 VKLYFKI--NRVQGTNAYTRFIGHDMTTDYIRRMIRRRRSRIDMIFNVETSDGYRMRVKV 125
Query: 452 IGFTNKDSLSQRKT 493
+ ++ S KT
Sbjct: 126 LTVPDRRIKSSIKT 139
>UniRef50_A7QAT4 Cluster: Chromosome chr5 scaffold_72, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr5 scaffold_72, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 168
Score = 59.3 bits (137), Expect = 5e-08
Identities = 35/98 (35%), Positives = 56/98 (57%)
Frame = -1
Query: 313 SLHIFGD*SEFAERPFRVSVSL*ISQGNFENSSLQSFRSNFRSLGTVDKRGADLPLAEHR 134
SLH+ G S+ + + L ISQGN ++S L+ FR + S + +K A++ AE R
Sbjct: 61 SLHVLGSQSDLPVG--MILIVLNISQGNLKHSVLEPFRGDLGSQSSANKGFANISDAEDR 118
Query: 133 RSLDIVPIFASEWVDNLLLNTFFTALRQAFIFPDRHVQ 20
R L+++P+ S+ V LLL++ F L +FPD H +
Sbjct: 119 RRLNVIPVLLSKRVGCLLLSSLF-PLGNPLVFPDDHCE 155
>UniRef50_Q8TVD1 Cluster: 30S ribosomal protein S3Ae; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S3Ae -
Methanopyrus kandleri
Length = 211
Score = 58.8 bits (136), Expect = 7e-08
Identities = 41/126 (32%), Positives = 59/126 (46%)
Frame = +2
Query: 92 DPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAER 271
D + K WY + AP MF +VG T + E + GRV E +L D+ D
Sbjct: 4 DKWKDKVWYTILAPDMFDNVEVGETPADDP-------EKVIGRVLETTLGDVLDDITKHH 56
Query: 272 SFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 451
FR+ V+G F G L D +R +V++ + I+ IDV T DGY +RV
Sbjct: 57 IKVFFRIYD--VEGTTAYSKFEGHRLMRDYVRSLVRRGTSRIDGVIDVVTKDGYKVRVAG 114
Query: 452 IGFTNK 469
+ FT +
Sbjct: 115 LAFTTR 120
>UniRef50_A7D401 Cluster: Ribosomal protein S3Ae; n=2;
Halorubrum|Rep: Ribosomal protein S3Ae - Halorubrum
lacusprofundi ATCC 49239
Length = 215
Score = 58.4 bits (135), Expect = 9e-08
Identities = 40/130 (30%), Positives = 63/130 (48%), Gaps = 1/130 (0%)
Frame = +2
Query: 104 RKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRK 283
+K WY V AP F ++++G TL + + GR +L +L D+ A +
Sbjct: 12 QKRWYSVLAPEQFDRQELGETLAEEP-------DQVVGRTITTTLGELTGDSGANNTKLT 64
Query: 284 FRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFT 463
F++ V F +LT D LR +V++ + +EA+I V TTD Y +RV + T
Sbjct: 65 FKITD--VGSDTAYTEFIKYELTRDYLRSLVRRGASKVEASITVLTTDDYRIRVQPVALT 122
Query: 464 NKDS-LSQRK 490
K + SQ K
Sbjct: 123 TKKADRSQEK 132
>UniRef50_Q6LZG0 Cluster: 30S ribosomal protein S3Ae; n=6;
Methanococcales|Rep: 30S ribosomal protein S3Ae -
Methanococcus maripaludis
Length = 225
Score = 58.0 bits (134), Expect = 1e-07
Identities = 39/134 (29%), Positives = 62/134 (46%)
Frame = +2
Query: 92 DPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAER 271
D + K WYD+ P F +G T N L GR+ E+SL DL +
Sbjct: 17 DTWKSKVWYDIYTPQSFGGDVIGQTPANDPAN-------LIGRISEISLRDLTNEHSKHM 69
Query: 272 SFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 451
+ F++ + V G N F G D T + L+ V++ ++ I A ++V+T DG+ +RV
Sbjct: 70 TRMYFKV--DGVSGNNATSQFVGHDTTREYLKSQVRRRRSKINAIVEVRTKDGFKVRVKA 127
Query: 452 IGFTNKDSLSQRKT 493
+ T + KT
Sbjct: 128 LVLTAVRARDHHKT 141
>UniRef50_Q9YCV8 Cluster: 30S ribosomal protein S3Ae; n=12;
Archaea|Rep: 30S ribosomal protein S3Ae - Aeropyrum
pernix
Length = 214
Score = 55.6 bits (128), Expect = 6e-07
Identities = 38/136 (27%), Positives = 64/136 (47%)
Frame = +2
Query: 86 IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDA 265
I D + K W+ V AP +F + +GTT + + L GRV E +L D+ D
Sbjct: 6 IRDTWRLKKWFKVVAPPLFGETVLGTTPADDP-------DKLIGRVMETTLFDITGDYSY 58
Query: 266 ERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 445
F+++ V+G F G +L D +R + ++ + + +V T DGY LRV
Sbjct: 59 VHVKMYFQVVR--VEGDTAYTRFKGHELLRDYIRGLTRRKSSKVTGIFNVWTKDGYGLRV 116
Query: 446 FCIGFTNKDSLSQRKT 493
+ FT + + +K+
Sbjct: 117 TAMAFTRQRCKTSQKS 132
>UniRef50_A5UKY8 Cluster: Small subunit ribosomal protein S3Ae; n=2;
Methanobacteriaceae|Rep: Small subunit ribosomal protein
S3Ae - Methanobrevibacter smithii (strain PS / ATCC
35061 / DSM 861)
Length = 193
Score = 51.6 bits (118), Expect = 1e-05
Identities = 35/133 (26%), Positives = 62/133 (46%)
Frame = +2
Query: 92 DPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAER 271
D + K WY +K P F +++G T + L GR EV++ +L D +
Sbjct: 12 DTWKEKSWYTIKTPVNFEDKEIGETPARDP-------DYLIGRGVEVTMRELSGDFS--K 62
Query: 272 SFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 451
+ K R + V G F G TTD +R M+++ + I+A+ VKT D +++
Sbjct: 63 QYIKLRFEIDNVAGDVANTKFTGHKTTTDYVRSMIRRGTSRIDASSVVKTKDDRKVKLHV 122
Query: 452 IGFTNKDSLSQRK 490
+ T + + S ++
Sbjct: 123 LAVTTRRAKSSQQ 135
>UniRef50_Q5V296 Cluster: 30S ribosomal protein S3Ae; n=4;
Halobacteriaceae|Rep: 30S ribosomal protein S3Ae -
Haloarcula marismortui (Halobacterium marismortui)
Length = 213
Score = 51.6 bits (118), Expect = 1e-05
Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 1/130 (0%)
Frame = +2
Query: 104 RKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRK 283
+K WY V+AP F + +G T + + GR E +L +L D +
Sbjct: 12 QKRWYTVQAPEQFDREVLGKTPAEEP-------DKVLGRTIETTLGELTNDASENNTKLT 64
Query: 284 FRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFT 463
F++ V + F +LT D LR +V++ + +EA I V TTD Y +++ + T
Sbjct: 65 FKI--NEVASDSAYTEFIRHELTRDYLRSLVRRGSSKVEAYITVLTTDDYRVQIQPVAVT 122
Query: 464 NKDS-LSQRK 490
K + SQ K
Sbjct: 123 TKKADASQEK 132
>UniRef50_A4YCU2 Cluster: Ribosomal protein S3Ae; n=1;
Metallosphaera sedula DSM 5348|Rep: Ribosomal protein
S3Ae - Metallosphaera sedula DSM 5348
Length = 216
Score = 51.2 bits (117), Expect = 1e-05
Identities = 32/124 (25%), Positives = 57/124 (45%)
Frame = +2
Query: 92 DPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAER 271
D + K W+ + +P +F + +G+T T GR E +L DL D
Sbjct: 16 DKWKMKKWFSIYSPKVFGEVSLGSTPAFDVSQTM-------GRKVETTLYDLTGDFSTVY 68
Query: 272 SFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 451
F+++ +G + F G +L+ D +R +V++ + I +D+ T DG+ LRV
Sbjct: 69 VHLYFKVVRN--EGERLFTEFAGHELSRDYVRSLVRRKSSKINKVVDITTKDGFTLRVKT 126
Query: 452 IGFT 463
+ T
Sbjct: 127 LALT 130
>UniRef50_A4GI78 Cluster: Ribosomal protein S3AE; n=1; uncultured
marine bacterium HF10_29C11|Rep: Ribosomal protein S3AE
- uncultured marine bacterium HF10_29C11
Length = 322
Score = 50.8 bits (116), Expect = 2e-05
Identities = 34/127 (26%), Positives = 66/127 (51%), Gaps = 1/127 (0%)
Frame = +2
Query: 92 DPFTRKDWYDVKAPSM-FSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 268
D + K WY ++AP ++ + +G T+ + E + GR++E++ + D
Sbjct: 21 DKWKTKRWYTIRAPRHPWNYQNIGETIGE-------SDEHIIGRIYEMTQQEFNGDFTKM 73
Query: 269 RSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 448
+FR ++E V G++ L F G T+ +R +++++ I+ IDV T DGY++R+
Sbjct: 74 HVMLRFR-VSETV-GQDALTTFVGHHHQTNHIRRQIRRYRGKIDDVIDVVTEDGYLVRIK 131
Query: 449 CIGFTNK 469
+ T K
Sbjct: 132 PLIITQK 138
>UniRef50_A2SQ57 Cluster: Ribosomal protein S3Ae; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S3Ae - Methanocorpusculum labreanum (strain ATCC 43576 /
DSM 4855 / Z)
Length = 206
Score = 48.0 bits (109), Expect = 1e-04
Identities = 41/145 (28%), Positives = 67/145 (46%), Gaps = 2/145 (1%)
Frame = +2
Query: 89 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 268
V+ + K+WY V AP K+ +G + + E + GRV VSL +L D +
Sbjct: 12 VEGWKAKNWYKVHAPEFLGKQFIGEIISSNP-------ENVPGRVLTVSLGELIQDYSKQ 64
Query: 269 RSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDG-YVLRV 445
F+++ V G F+G ++T + +R MVKK + +++ I V L+V
Sbjct: 65 NVRASFKIMN--VAGDAAYTQFNGHEMTKEFVRAMVKKRASRVDSTITVTPLGSTRELQV 122
Query: 446 FCIGFT-NKDSLSQRKTCYAQHTQV 517
FT N LSQ + A+ +V
Sbjct: 123 TITAFTINHARLSQVQELRAKMVKV 147
>UniRef50_Q3LW71 Cluster: Ribosomal protein S3a; n=1; Bigelowiella
natans|Rep: Ribosomal protein S3a - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 215
Score = 46.0 bits (104), Expect = 5e-04
Identities = 35/139 (25%), Positives = 64/139 (46%), Gaps = 1/139 (0%)
Frame = +2
Query: 107 KDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKF 286
K+W V AP +F + +G + N+ + + R EVSL++L D S+ K
Sbjct: 25 KEWKIVIAPKIFEYKIIGYIINNKYTNNSGRLKEISKRNLEVSLSELINDYS---SYYKI 81
Query: 287 RLIAEYVQGRNVL-CNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFT 463
+ Y + + F+G L+ D + MV K L+E +I + T V+ +F + +T
Sbjct: 82 IKLQPYTMNKMFIRTTFNGFRLSYDFIFSMVLKPTKLVEFSIKINTLKKKVVEIFVL-YT 140
Query: 464 NKDSLSQRKTCYAQHTQVR 520
+L Y + +++R
Sbjct: 141 ITKNLHSNSITYGKRSRIR 159
>UniRef50_A0RTS7 Cluster: Ribosomal protein S3AE; n=2;
Thermoprotei|Rep: Ribosomal protein S3AE - Cenarchaeum
symbiosum
Length = 203
Score = 46.0 bits (104), Expect = 5e-04
Identities = 34/135 (25%), Positives = 63/135 (46%)
Frame = +2
Query: 86 IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDA 265
+ D + K W + AP F+ V V T + KGRV EV+L D+
Sbjct: 8 VKDKWRDKRWITIHAPDSFNS--VPAARVPITD-----DKHAKGRVIEVTLFDILKGDPQ 60
Query: 266 ERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 445
+ +++ + I + V + F + + + LR +V++ + + +DVKT+DGYV R+
Sbjct: 61 QNNYKIYFQI-DKVSEESATSIFKRYEYSKEYLRSLVRRGSSKVNYIVDVKTSDGYVFRL 119
Query: 446 FCIGFTNKDSLSQRK 490
+ T + + +K
Sbjct: 120 KVLALTYRHLNTSKK 134
>UniRef50_A4D1I1 Cluster: Similar to ribosomal protein S3a; 40S
ribosomal protein S3a; v-fos transformation effector
protein 1; n=2; Eutheria|Rep: Similar to ribosomal
protein S3a; 40S ribosomal protein S3a; v-fos
transformation effector protein 1 - Homo sapiens (Human)
Length = 119
Score = 41.5 bits (93), Expect = 0.011
Identities = 15/27 (55%), Positives = 22/27 (81%)
Frame = +2
Query: 86 IVDPFTRKDWYDVKAPSMFSKRQVGTT 166
++D F++KDWYDVKA +MF+ R +G T
Sbjct: 21 VIDQFSKKDWYDVKALAMFNIRNIGKT 47
>UniRef50_Q6KYU3 Cluster: 30S ribosomal protein S3Ae; n=2;
Thermoplasmatales|Rep: 30S ribosomal protein S3Ae -
Picrophilus torridus
Length = 209
Score = 39.5 bits (88), Expect = 0.045
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Frame = +2
Query: 92 DPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLK-GRVFEVSLADLQADTDAE 268
D + K WY + APS +R++ + A L GR EV ++D +
Sbjct: 11 DKWKEKTWYTIVAPSFLGEREIAL--------SPAADPSLMIGRKVEVPVSDFTGNFRKS 62
Query: 269 RSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVL 439
+ FR+ + G+ F G ++ D +R MV++ + I+ + KT DGY L
Sbjct: 63 STMVIFRV--KECTGKRCTTEFIGHKVSDDTIRRMVRRRKERIDIIMPSKTKDGYRL 117
>UniRef50_Q978Z2 Cluster: 30S ribosomal protein S3Ae; n=2;
Thermoplasma|Rep: 30S ribosomal protein S3Ae -
Thermoplasma volcanium
Length = 215
Score = 37.5 bits (83), Expect = 0.18
Identities = 31/133 (23%), Positives = 57/133 (42%)
Frame = +2
Query: 92 DPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAER 271
+ + K WY V+AP ++V L S + RV EV +++L +
Sbjct: 12 EKWKEKVWYTVEAPPYLGSKEVSVALGED-------SNSMVNRVVEVPISELTGNFKKSN 64
Query: 272 SFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 451
FR+ +G F G + D +R +V++ + I+ DVKT+D ++ V
Sbjct: 65 EKALFRITN--CEGTKCKTIFIGHYIGDDYIRRLVRRRKERIDIIEDVKTSDNSIITVKI 122
Query: 452 IGFTNKDSLSQRK 490
+ T+ + +K
Sbjct: 123 VVVTDGKVTNTKK 135
>UniRef50_Q4SVA9 Cluster: Chromosome undetermined SCAF13769, whole
genome shotgun sequence; n=3; Tetraodontidae|Rep:
Chromosome undetermined SCAF13769, whole genome shotgun
sequence - Tetraodon nigroviridis (Green puffer)
Length = 556
Score = 33.9 bits (74), Expect = 2.2
Identities = 19/55 (34%), Positives = 33/55 (60%)
Frame = -2
Query: 411 SMLASMRVCHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSAC 247
S+L S+ +C L++ +SLS+ S+ + +LRPC ++ ++L LS VS C
Sbjct: 389 SVLVSLSLCLSLSVLVSLSLSSSLSLSVPVSLRPCLSLSVLVSL--SLSVPVSLC 441
>UniRef50_A0YI31 Cluster: DNA mismatch repair protein; n=5;
Cyanobacteria|Rep: DNA mismatch repair protein - Lyngbya
sp. PCC 8106
Length = 563
Score = 33.1 bits (72), Expect = 3.9
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = -2
Query: 360 LSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSAS--VSACRSARETSKTLPFNPSEAIFV 187
L VR++P ++ + C + I L+L KDL A+ +ACRSA L + +
Sbjct: 463 LWAVRTVP-EMLAQREDCHDALIELSLGKDLQAAQVATACRSAIRNGTPLSLTEMQTLLE 521
Query: 186 PWVR 175
WVR
Sbjct: 522 QWVR 525
>UniRef50_Q0KDB8 Cluster: L-Amino-acid oxidase; n=3; cellular
organisms|Rep: L-Amino-acid oxidase - Ralstonia eutropha
(strain ATCC 17699 / H16 / DSM 428 / Stanier
337)(Cupriavidus necator (strain ATCC 17699 / H16 / DSM
428 / Stanier337))
Length = 434
Score = 32.7 bits (71), Expect = 5.2
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +3
Query: 342 WTSQPISSGGWL--KNGRLSSKPTLM*RQPMDTFYVSSALVSPI 467
W + P S GGW+ + G L+ LM RQP + + A ++PI
Sbjct: 363 WANDPFSKGGWMHHRPGNLTQAAPLM-RQPHGRIHFAGADIAPI 405
>UniRef50_Q01HQ6 Cluster: OSIGBa0153E02-OSIGBa0093I20.19 protein;
n=42; Oryza sativa|Rep: OSIGBa0153E02-OSIGBa0093I20.19
protein - Oryza sativa (Rice)
Length = 1752
Score = 32.3 bits (70), Expect = 6.8
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = +3
Query: 297 PNMCK-DVMCSATSTAWTSQPISSGGWLKNGRL--SSKPTLM*RQPMDTFYVSSALVSPI 467
P CK + WTS P+++ GW NGR+ + PTL Q + ++ A VS +
Sbjct: 1631 PGKCKLHAWLIIQNRVWTSDPLATRGWQNNGRVPPARTPTLGVAQSVKDWWEMLASVSGV 1690
>UniRef50_Q7N7R8 Cluster: Hypothetical gene; n=1; Photorhabdus
luminescens subsp. laumondii|Rep: Hypothetical gene -
Photorhabdus luminescens subsp. laumondii
Length = 117
Score = 31.9 bits (69), Expect = 9.0
Identities = 17/73 (23%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Frame = -2
Query: 495 HVLRWL---KESLLVKPMQKTRRTYPSVVFTSMLASMRVCHFLTIHLSLSVVRSMPWKLQ 325
H WL +SL+ P+ +TRR +P+ F S+ ++ + +HL + V +
Sbjct: 15 HDFIWLLIRHDSLIFAPVLQTRRNHPTPHFPSITVWLKFTKLVQVHLLHTCVLPLSRSRD 74
Query: 324 STLRPCTYSAINL 286
+ ++ C+ +++ L
Sbjct: 75 TFIQRCSRASVTL 87
>UniRef50_A0W872 Cluster: Putative uncharacterized protein; n=1;
Geobacter lovleyi SZ|Rep: Putative uncharacterized
protein - Geobacter lovleyi SZ
Length = 288
Score = 31.9 bits (69), Expect = 9.0
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = +2
Query: 242 DLQADTDAERSFRKFRLIAEYVQGRNVLCNFH-GMDLTTDKLRWMVKKWQTLIEANIDVK 418
+L+++ +A +FRL E+++G N + + MD T K R VK+W TL D
Sbjct: 192 NLRSELEAT-GLEQFRLCCEWLKGCNKIKTLNRSMDSYTLKRR--VKRWATLKGVEDDYV 248
Query: 419 TTDGYVLRVFCIGFTNK 469
+ ++ GFT K
Sbjct: 249 SNGAFIAAAIHCGFTLK 265
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 524,789,363
Number of Sequences: 1657284
Number of extensions: 10468893
Number of successful extensions: 27991
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 27237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27963
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32201017387
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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