Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1m05
         (520 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY070949-1|AAL48571.1|  217|Drosophila melanogaster RE04220p pro...   248   5e-66
AF034971-1|AAC62117.1|  268|Drosophila melanogaster ribosomal pr...   248   5e-66
AE014135-4|AAF59372.1|  268|Drosophila melanogaster CG2168-PA, i...   248   5e-66
Y10115-1|CAA71201.1|  270|Drosophila melanogaster ribosomal prot...   236   1e-62
AE014135-5|AAN06541.1|  218|Drosophila melanogaster CG2168-PB, i...   176   1e-44
AE014135-6|AAN06542.1|  163|Drosophila melanogaster CG2168-PD, i...   103   2e-22
X68794-1|CAA48691.2| 3004|Drosophila melanogaster type II transm...    28   6.6  
AY010554-1|AAG32586.1|  266|Drosophila melanogaster ACP32 protein.     28   6.6  
AY010547-1|AAG32579.1|  266|Drosophila melanogaster ACP32 protein.     28   6.6  
AY010544-1|AAG32576.1|  266|Drosophila melanogaster ACP32 protein.     28   6.6  
AE014298-1757|AAF48154.2| 3004|Drosophila melanogaster CG32659-P...    28   6.6  
AE014297-400|AAF51921.2|  397|Drosophila melanogaster CG15581-PA...    28   8.7  
AE014296-2526|ABC66138.1|  277|Drosophila melanogaster CG33985-P...    28   8.7  

>AY070949-1|AAL48571.1|  217|Drosophila melanogaster RE04220p
           protein.
          Length = 217

 Score =  248 bits (606), Expect = 5e-66
 Identities = 116/145 (80%), Positives = 126/145 (86%)
 Frame = +2

Query: 86  IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDA 265
           +VDPF+RKDWYDVKAP+MF  RQ+G TLVNRTQG +IAS+ LKGRVFEVSLADLQ D D 
Sbjct: 21  VVDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKDIDP 80

Query: 266 ERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 445
           ERSFRKFRLIAE VQ RNVLCNFHGMDLTTDK R MVKKWQTLIEA ++ KT DGY+LRV
Sbjct: 81  ERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRV 140

Query: 446 FCIGFTNKDSLSQRKTCYAQHTQVR 520
           FCIGFT KD  SQRKTCYAQ +QVR
Sbjct: 141 FCIGFTAKDQQSQRKTCYAQQSQVR 165


>AF034971-1|AAC62117.1|  268|Drosophila melanogaster ribosomal
           protein S3a protein.
          Length = 268

 Score =  248 bits (606), Expect = 5e-66
 Identities = 116/145 (80%), Positives = 126/145 (86%)
 Frame = +2

Query: 86  IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDA 265
           +VDPF+RKDWYDVKAP+MF  RQ+G TLVNRTQG +IAS+ LKGRVFEVSLADLQ D D 
Sbjct: 21  VVDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKDIDP 80

Query: 266 ERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 445
           ERSFRKFRLIAE VQ RNVLCNFHGMDLTTDK R MVKKWQTLIEA ++ KT DGY+LRV
Sbjct: 81  ERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRV 140

Query: 446 FCIGFTNKDSLSQRKTCYAQHTQVR 520
           FCIGFT KD  SQRKTCYAQ +QVR
Sbjct: 141 FCIGFTAKDQQSQRKTCYAQQSQVR 165


>AE014135-4|AAF59372.1|  268|Drosophila melanogaster CG2168-PA,
           isoform A protein.
          Length = 268

 Score =  248 bits (606), Expect = 5e-66
 Identities = 116/145 (80%), Positives = 126/145 (86%)
 Frame = +2

Query: 86  IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDA 265
           +VDPF+RKDWYDVKAP+MF  RQ+G TLVNRTQG +IAS+ LKGRVFEVSLADLQ D D 
Sbjct: 21  VVDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKDIDP 80

Query: 266 ERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 445
           ERSFRKFRLIAE VQ RNVLCNFHGMDLTTDK R MVKKWQTLIEA ++ KT DGY+LRV
Sbjct: 81  ERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRV 140

Query: 446 FCIGFTNKDSLSQRKTCYAQHTQVR 520
           FCIGFT KD  SQRKTCYAQ +QVR
Sbjct: 141 FCIGFTAKDQQSQRKTCYAQQSQVR 165


>Y10115-1|CAA71201.1|  270|Drosophila melanogaster ribosomal protein
           S3a protein.
          Length = 270

 Score =  236 bits (577), Expect = 1e-62
 Identities = 112/146 (76%), Positives = 122/146 (83%), Gaps = 1/146 (0%)
 Frame = +2

Query: 86  IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLA-DLQADTD 262
           +VDPF+RKDWYDVKAP+MF  RQ+G TLVNRTQG +IAS+  KGRVFEVSL  DLQ D D
Sbjct: 21  VVDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYFKGRVFEVSLVPDLQKDID 80

Query: 263 AERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLR 442
            E SFRKFRLIAE VQ RNVLCNFHGMDLTTDK R MVKKWQTLIEA ++ KT DGY+LR
Sbjct: 81  PEHSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLR 140

Query: 443 VFCIGFTNKDSLSQRKTCYAQHTQVR 520
           VFCIGFT KD  SQRKTCYA  +QVR
Sbjct: 141 VFCIGFTAKDQQSQRKTCYAHESQVR 166


>AE014135-5|AAN06541.1|  218|Drosophila melanogaster CG2168-PB,
           isoform B protein.
          Length = 218

 Score =  176 bits (429), Expect = 1e-44
 Identities = 84/102 (82%), Positives = 88/102 (86%)
 Frame = +2

Query: 215 GRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTL 394
           GRVFEVSLADLQ D D ERSFRKFRLIAE VQ RNVLCNFHGMDLTTDK R MVKKWQTL
Sbjct: 14  GRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTL 73

Query: 395 IEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVR 520
           IEA ++ KT DGY+LRVFCIGFT KD  SQRKTCYAQ +QVR
Sbjct: 74  IEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVR 115


>AE014135-6|AAN06542.1|  163|Drosophila melanogaster CG2168-PD,
           isoform D protein.
          Length = 163

 Score =  103 bits (246), Expect = 2e-22
 Identities = 47/60 (78%), Positives = 51/60 (85%)
 Frame = +2

Query: 341 MDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVR 520
           MDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT KD  SQRKTCYAQ +QVR
Sbjct: 1   MDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVR 60


>X68794-1|CAA48691.2| 3004|Drosophila melanogaster type II
            transmembrane protein protein.
          Length = 3004

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 216  PFNP-SEAIFVPWVRLTSVVPTCLLLNIDGALTS 118
            PF P +  +FVPW R+  + P  + L+ D   TS
Sbjct: 963  PFRPLTRTVFVPWNRIVVLPPVQMQLSDDDETTS 996


>AY010554-1|AAG32586.1|  266|Drosophila melanogaster ACP32 protein.
          Length = 266

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +3

Query: 264 RKGLSANSD*SPNMCKDVMCSATSTAWTSQPISSGGWLKNGRLSSK 401
           R+G +A +D     C DV  + T+T W   P++ G   ++G L  K
Sbjct: 21  REGRTARAD---QRCSDVADADTATHWLPGPVALGQLPEHGALGQK 63


>AY010547-1|AAG32579.1|  266|Drosophila melanogaster ACP32 protein.
          Length = 266

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +3

Query: 264 RKGLSANSD*SPNMCKDVMCSATSTAWTSQPISSGGWLKNGRLSSK 401
           R+G +A +D     C DV  + T+T W   P++ G   ++G L  K
Sbjct: 21  REGRTARAD---QRCSDVADADTATHWLPGPVALGQLPEHGALGQK 63


>AY010544-1|AAG32576.1|  266|Drosophila melanogaster ACP32 protein.
          Length = 266

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +3

Query: 264 RKGLSANSD*SPNMCKDVMCSATSTAWTSQPISSGGWLKNGRLSSK 401
           R+G +A +D     C DV  + T+T W   P++ G   ++G L  K
Sbjct: 21  REGRTARAD---QRCSDVADADTATHWLPGPVALGQLPEHGALGQK 63


>AE014298-1757|AAF48154.2| 3004|Drosophila melanogaster CG32659-PA
            protein.
          Length = 3004

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 216  PFNP-SEAIFVPWVRLTSVVPTCLLLNIDGALTS 118
            PF P +  +FVPW R+  + P  + L+ D   TS
Sbjct: 963  PFRPLTRTVFVPWNRIVVLPPVQMQLSDDDETTS 996


>AE014297-400|AAF51921.2|  397|Drosophila melanogaster CG15581-PA
           protein.
          Length = 397

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +2

Query: 263 AERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTL 394
           +E    +FR +++Y+   N L N  G+D  + KL++  + W T+
Sbjct: 4   SESPSSRFRELSKYI---NSLTNLLGVDFLSPKLKFNYRTWTTI 44


>AE014296-2526|ABC66138.1|  277|Drosophila melanogaster CG33985-PA
           protein.
          Length = 277

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 115 VRCQGSVYVQQEASRHHACQPYPGNENC 198
           VRC    Y  +E  + H    YP ++NC
Sbjct: 202 VRCLAMTYNPREQCKRHVIDVYPHSDNC 229


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,654,258
Number of Sequences: 53049
Number of extensions: 498193
Number of successful extensions: 1554
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1553
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1908489216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)