Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1m01
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.02c |sap1||switch-activating protein Sap1|Schizosacchar...    28   1.5  
SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase Ade2|Sc...    27   3.5  
SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr 3...    27   3.5  
SPAC23D3.08 |usp108||U1 snRNP-associated protein Usp108|Schizosa...    26   4.7  
SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha...    26   4.7  
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    26   6.2  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    26   6.2  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    26   6.2  
SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual     26   6.2  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    25   8.2  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    25   8.2  

>SPCC1672.02c |sap1||switch-activating protein
           Sap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 254

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +2

Query: 587 NEKLLNKLESSSYNKSNMDQLIAIVNFLEK 676
           N+++  +L+  +  + N+D L+A VNFL K
Sbjct: 143 NDEINERLKKLTEEQQNVDMLVAKVNFLSK 172


>SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase
           Ade2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -2

Query: 277 NSACISLRVKQSELHPPKCVQFLGGIVVVYL--F*SGVEKVLQ 155
           N       +  S L  PKC   +G  VVVYL  F S +EK+ Q
Sbjct: 59  NGVTYDFHILPSGLVNPKCQNLIGSGVVVYLPAFFSELEKLEQ 101


>SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 555

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = -3

Query: 315 YSLCA*AC*WLP*TALVFRFGSSSPNYTRLSACNFWGASLLSIFFRVA*KKSCNCLLSKR 136
           Y + A  C WL    L+F    +S + +++ A +  G    S+F     KK+ N L +K 
Sbjct: 49  YEVFAPVCMWLDAIDLLFERLKASVDVSKIQAISGAGQQHASVFLLKGSKKALNSLDAKS 108

Query: 135 FL 130
            L
Sbjct: 109 SL 110


>SPAC23D3.08 |usp108||U1 snRNP-associated protein
           Usp108|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +2

Query: 587 NEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYI 694
           NEK ++ + +S  N+S + QL A +  L +K ++YI
Sbjct: 307 NEKFISVVGTSEANQSALMQLYAALISLGRKIVSYI 342


>SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 473

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +2

Query: 83  YDYSN-YIEFFSFVRSIKKRFDNRQLQDFFYATL 181
           YD S+ Y+EF   + S++K+ D+ +    FY  L
Sbjct: 83  YDQSSSYVEFRKHLESVEKKADSSKALRIFYIAL 116


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = +2

Query: 479 NISSRIQAGRFKGLQKSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQ 646
           ++SS+ +   F    ++    + EQ  S +     K  ++LN L    YN  N DQ
Sbjct: 579 SLSSKHEVDLFTAENEAAREKLVEQLCSLQAQRKQKINEILNLLSMGMYNTINTDQ 634


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
 Frame = -2

Query: 391 PKLA-LIYSFIRS---NDTMSNMCAQTSSVFIVCLSVLMASLNSACISLRVKQSELHPP 227
           P+LA ++Y FI S   ND+M  + A+   +F  CL ++     +    +RV   ++ PP
Sbjct: 170 PQLASILYQFIFSAPPNDSMRMLQARGIKLFRSCLELIEIYKETKAEHVRVFLEQILPP 228


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = -1

Query: 536  PCLIFVNL*NDPLVFLMIYFFNAQQPGNSFVMKTHLTLRTFVGNYCEM 393
            P LI ++L    L   +I+FF+   P N+F M+T LT  T + N  E+
Sbjct: 993  PALIQLSLDGFRLAMNVIFFFSMDLPRNAF-MQT-LTKFTHLNNTSEL 1038


>SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 224

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 83  YDYSNYIEFFSFVRSIKK 136
           Y YS Y+E F F R+ KK
Sbjct: 81  YQYSTYLENFVFARNAKK 98


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +2

Query: 119 VRSIKKRFDNRQL--QDFFYATLKKIDNNDAPQKLHALRRV*FGLLDPKRNT 268
           + SI KRF NRQ+  +D     + +I NN    KL+A   +    L   RNT
Sbjct: 415 IASIFKRFQNRQMKNKDARSQFMTEIINNIRSIKLYAWENIFLQKLLQLRNT 466


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +2

Query: 110 FSFVRSIKKRFDNRQLQDFFYATLKKIDNNDAPQKLHALRRV*FGLLDPKRN 265
           FS   SIK R++NR  Q F     K+     +  KL+  R+    ++  KRN
Sbjct: 690 FSEQESIKLRWENRIDQMFTKKFGKRASEWKSSSKLNQARQTILDIIGSKRN 741


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,008,037
Number of Sequences: 5004
Number of extensions: 63122
Number of successful extensions: 196
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)