Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1m01
         (716 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0557 + 4103721-4104616,4105428-4105626                           32   0.40 
02_02_0617 - 12184745-12185008,12185352-12185451,12186585-121866...    30   2.1  
03_05_0625 - 26225201-26225879,26226706-26227553                       29   2.8  
04_04_0964 - 29749624-29749649,29749742-29749945,29750036-297506...    28   6.4  
07_03_0508 - 18892193-18893119,18893183-18894528,18894594-18895206     28   8.5  

>02_01_0557 + 4103721-4104616,4105428-4105626
          Length = 364

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 19/59 (32%), Positives = 32/59 (54%)
 Frame = -2

Query: 259 LRVKQSELHPPKCVQFLGGIVVVYLF*SGVEKVLQLPIIETLLDAAHKTKKFNVIAVIV 83
           LR++      PK ++FLG +V+ YL  + +   L + +   L+ +AHK  K   I +IV
Sbjct: 82  LRMENGGHVEPKTIKFLGFVVMGYLLITNLGGSLLIYLYLNLVPSAHKILKRKGIGIIV 140


>02_02_0617 -
           12184745-12185008,12185352-12185451,12186585-12186653,
           12187988-12188037
          Length = 160

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +3

Query: 210 KNCTHLGGCNSDCLTRSEIQALFREAINTLKHTMNTEDVCAHMLDI 347
           ++C HL G + + L   E+Q L ++  NT KH  + +D   HML +
Sbjct: 38  RHC-HLMGEDLESLNLKELQQLEKQLKNTSKHIRSRKDEEKHMLAV 82


>03_05_0625 - 26225201-26225879,26226706-26227553
          Length = 508

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 278 EQRLYFASGQAVRITPA*VRAIFGGHRC 195
           E+R +   G+A R T A +R  F GH+C
Sbjct: 236 EERTFHRQGEAARTTIADMRMDFSGHKC 263


>04_04_0964 -
           29749624-29749649,29749742-29749945,29750036-29750634,
           29750742-29750826,29750914-29751562,29751568-29751643,
           29753891-29753957,29754097-29754998,29756579-29756790
          Length = 939

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
 Frame = +2

Query: 95  NYIEFFSFVRSIKKRFDNRQLQDFFYATLKKIDNNDAPQK---LHALRRV*FG-LLDPKR 262
           +Y++       I   FDN  L D +   L + D N++P++   +H + R+  G L+    
Sbjct: 291 SYVQELELCAEISGLFDNPLLGDEYPYELNQYDYNNSPEQCTCMHCVARMESGALICALP 350

Query: 263 NTSAVQGSHQHAQAHNEY 316
           +T ++   H  A+   EY
Sbjct: 351 STFSIHFFHLDAEIDMEY 368


>07_03_0508 - 18892193-18893119,18893183-18894528,18894594-18895206
          Length = 961

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +1

Query: 430 RCVFITNELPGCWALKKYIIKNTSGSFQRFTKIKHGKHAGATI 558
           +  FIT     C+    + +KN   +FQR T+I  G   G  +
Sbjct: 803 KTAFITRIGTYCYTTMPFGLKNAGPTFQRTTRISLGSQIGRNV 845


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,960,594
Number of Sequences: 37544
Number of extensions: 381013
Number of successful extensions: 1003
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)