Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1m01
         (716 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006701-1|AAM97962.1|  327|Caenorhabditis elegans Hypothetical ...    30   1.9  
Z95123-1|CAD59158.1|   83|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z73423-2|CAA97774.1|  290|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z50110-3|CAA90445.2|  459|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AC006801-2|AAF60751.1|  914|Caenorhabditis elegans Hypothetical ...    29   4.4  
Z79695-2|CAB01971.2| 1008|Caenorhabditis elegans Hypothetical pr...    28   5.8  

>AC006701-1|AAM97962.1|  327|Caenorhabditis elegans Hypothetical
           protein Y104H12D.2 protein.
          Length = 327

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = +2

Query: 572 AAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINY 691
           AA  KNE LL+ L+  SYN++   Q++ I     K N NY
Sbjct: 34  AARTKNETLLSLLDKFSYNET--VQMVVIKQIGRKNNCNY 71


>Z95123-1|CAD59158.1|   83|Caenorhabditis elegans Hypothetical
           protein VZK822L.2 protein.
          Length = 83

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -2

Query: 295 VLMASLNSACISLRVKQSELHPPKCVQFLGGIVVVYL 185
           +L+  ++  CI + + QS L PP+C     G +++ L
Sbjct: 13  LLVGGMSIVCILIHIIQSTLRPPQCCHNSSGTLIIGL 49


>Z73423-2|CAA97774.1|  290|Caenorhabditis elegans Hypothetical
           protein C03A3.3 protein.
          Length = 290

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +2

Query: 56  YMNDKQLITYDYSNYIEFFSFVRSIKKRFDNRQLQDFFYATLKKIDNNDAP 208
           Y  D  + TY Y++  ++ + VRSI K   ++ ++  + A+    DNN  P
Sbjct: 178 YRFDDIMFTYQYTDIRQYENSVRSILKFVKSQDVEVRYSASKNDTDNNCLP 228


>Z50110-3|CAA90445.2|  459|Caenorhabditis elegans Hypothetical
           protein F18H3.4 protein.
          Length = 459

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = +2

Query: 524 KSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYIL 697
           K N+    EQ   TE  A+ +N+KLL  L   + ++  MDQ +   N ++K  + + L
Sbjct: 121 KRNLSARDEQALVTEIDALKRNKKLLESLAEITSHRKGMDQELE-KNRIQKHKVYFEL 177


>AC006801-2|AAF60751.1|  914|Caenorhabditis elegans Hypothetical
           protein Y52D5A.1 protein.
          Length = 914

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 25/127 (19%), Positives = 61/127 (48%), Gaps = 8/127 (6%)
 Frame = -2

Query: 385 LALIYSFIRSNDTMSNM------CAQTSSVFIVCLSVLMASLNSACISLRVKQSELHPPK 224
           L +IY F++ N+++ ++          +S+F + +  +   ++++   L V    L   K
Sbjct: 40  LPVIYIFLKMNNSIFDLPVIYIFLKMNNSIFDLPVIYIFLKMSNSIFKLPVIYIFL---K 96

Query: 223 CVQFLGGIVVVYLF*SGVEKVLQLPIIETLLDAAHKTKKFNVIAVIVR--DQLFVVHIIK 50
               +  + V+Y+F      +  LP+I   L  ++   K  VI + ++  + +F + +I 
Sbjct: 97  MSNSIFDLPVIYIFLKMSNSIFDLPVIYIFLKMSNSIFKLPVIYIFLKMSNSIFDLPVIY 156

Query: 49  IFVERHD 29
           IF++ ++
Sbjct: 157 IFLKMNN 163


>Z79695-2|CAB01971.2| 1008|Caenorhabditis elegans Hypothetical
           protein F27D4.6 protein.
          Length = 1008

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +2

Query: 29  IVPLNKYFNYMNDKQLITYDY-SNYIEFFS 115
           I+P +KY NY+  K    +DY  N  E FS
Sbjct: 498 IIPASKYNNYLQGKYAFEFDYKENRSEVFS 527


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,023,413
Number of Sequences: 27780
Number of extensions: 370258
Number of successful extensions: 1042
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1038
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)