Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc1l24
(681 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom... 204 9e-54
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy... 130 2e-31
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc... 128 1e-30
SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch... 120 2e-28
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 118 6e-28
SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyc... 112 5e-26
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc... 104 1e-23
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S... 27 1.9
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 27 1.9
SPAC17A5.08 |||COPII-coated vesicle component Erp2/3/4 |Schizosa... 27 1.9
SPAC4G8.06c |trm12||tRNA methyltransferase Trm12 |Schizosaccharo... 27 1.9
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 4.4
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 26 5.8
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 5.8
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 26 5.8
>SPCC1795.04c |||20S proteasome component alpha
7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 253
Score = 204 bits (498), Expect = 9e-54
Identities = 95/191 (49%), Positives = 133/191 (69%)
Frame = +2
Query: 107 MSSIGTGYDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYE 286
MSSIGTGYDL FSPDGR+FQ EYA KAVEN+ T IG++ +DGV+ A+EK++TSKL +
Sbjct: 1 MSSIGTGYDLGLF-FSPDGRLFQAEYAYKAVENASTCIGIKCEDGVILALEKVVTSKLLK 59
Query: 287 PGANKRIFHIDEHVGMAVAGLISDARQIVETARSEASNYRSQYGSPVPLKYLNERVSMYM 466
P N RI +D H+G+A G I D + IV+ AR EA+++R YGSP+P + +R+ Y+
Sbjct: 60 PRVNNRIGSVDRHIGIATTGFIPDGQHIVKRARDEATSWRDNYGSPIPGTVIADRLGNYV 119
Query: 467 HAYTLYSAVRPYGCSVVMGTWTDYEGPQMYMLDPSGVSFSYFGCAVGKAKQAAKTEIEKL 646
+T YS+VRP+G + T+ D EGP +YM++P+GV + Y G A GK +Q A+ E+EKL
Sbjct: 120 QLFTCYSSVRPFGVMSFVATY-DSEGPHLYMVEPNGVYWGYNGAAAGKGRQVARNELEKL 178
Query: 647 KLGDLTVKELV 679
L +K+ V
Sbjct: 179 NFSSLKMKDAV 189
>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 130 bits (313), Expect = 2e-31
Identities = 69/188 (36%), Positives = 108/188 (57%), Gaps = 6/188 (3%)
Frame = +2
Query: 128 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYEPGANKRI 307
YD + FSP+GR+FQVEYA +A++ T IG++ KD VV VEK +TS L E + +++
Sbjct: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKDAVVLGVEKRLTSPLMESHSVEKL 67
Query: 308 FHIDEHVGMAVAGLISDARQIVETARSEASNYRSQYGSPVPLKYLNERVSMYMHAY---- 475
F ID H+G A++GL +DAR I+E AR + N+R Y P ++ + + +
Sbjct: 68 FEIDSHIGCAISGLTADARTIIEHARVQTQNHRFTYDEPQGIESTTQSICDLALRFGEGE 127
Query: 476 --TLYSAVRPYGCSVVMGTWTDYEGPQMYMLDPSGVSFSYFGCAVGKAKQAAKTEIEKLK 649
RP+G ++++ D GPQ+Y +PSG F Y A+G + AK+E+ K
Sbjct: 128 DGEERIMSRPFGVALLI-AGIDEHGPQLYHSEPSGTYFRYEAKAIGSGSEPAKSELVKEF 186
Query: 650 LGDLTVKE 673
D+T++E
Sbjct: 187 HKDMTLEE 194
>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 128 bits (308), Expect = 1e-30
Identities = 66/175 (37%), Positives = 101/175 (57%), Gaps = 1/175 (0%)
Frame = +2
Query: 122 TGYDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYEPGANK 301
+GYD + S FSPDGR+ QVEY +AV T I LRG + +V VE+ KL +
Sbjct: 2 SGYDRALSVFSPDGRLLQVEYGQEAVRRGTTAIALRGNECIVIGVERKNVPKLQNVSNFQ 61
Query: 302 RIFHIDEHVGMAVAGLISDARQIVETARSEASNYRSQYGSPVPLKYLNERVSMYMHAYTL 481
+I +D HV +A AGL +DAR +++ AR EA N++ PV ++YL V+ YT
Sbjct: 62 KIAMVDNHVCLAFAGLNADARILIDKARVEAQNHKLNLADPVSIEYLTRYVAGVQQKYTQ 121
Query: 482 YSAVRPYGCS-VVMGTWTDYEGPQMYMLDPSGVSFSYFGCAVGKAKQAAKTEIEK 643
VRP+G S ++ G P++Y +P+G+ ++ A+G+A +AA+ +EK
Sbjct: 122 SGGVRPFGVSTLIAGFDVGDNTPRVYQTEPAGIYNAWKATAIGRASKAAREYLEK 176
>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 120 bits (289), Expect = 2e-28
Identities = 60/183 (32%), Positives = 102/183 (55%), Gaps = 1/183 (0%)
Frame = +2
Query: 128 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYEPGAN-KR 304
YD + FSP+GR++QVEYA +A+ ++G +G+ KDG+V A EK +TSKL E + ++
Sbjct: 5 YDSRTTIFSPEGRLYQVEYALEAINHAGVALGIVAKDGIVLAAEKKVTSKLLEQEESAEK 64
Query: 305 IFHIDEHVGMAVAGLISDARQIVETARSEASNYRSQYGSPVPLKYLNERVSMYMHAYTLY 484
++HI +++ AVAGL +DA ++ AR Y + +P + L RV YT Y
Sbjct: 65 LYHIGDNMLCAVAGLTADANILINYARRVGQQYLQTFNEEMPCEQLVRRVCDLKQGYTQY 124
Query: 485 SAVRPYGCSVVMGTWTDYEGPQMYMLDPSGVSFSYFGCAVGKAKQAAKTEIEKLKLGDLT 664
+RP+G S + W G Q++ +PSG S+ ++G + ++ + + D+
Sbjct: 125 GGLRPFGVSFLYAGWDHIRGYQLFQSNPSGNYGSWQANSIGGNSTSVQSLMRQEYKDDIN 184
Query: 665 VKE 673
+ E
Sbjct: 185 LDE 187
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 118 bits (285), Expect = 6e-28
Identities = 65/185 (35%), Positives = 104/185 (56%), Gaps = 1/185 (0%)
Frame = +2
Query: 128 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYEPGANKRI 307
Y S + FSP+G++ Q+EYA AV T +G++ DGVV A EK TS+L + +++
Sbjct: 5 YAFSLTTFSPNGKLVQIEYALNAVNAGVTSVGIKATDGVVLATEKKPTSELAIGASLEKV 64
Query: 308 FHIDEHVGMAVAGLISDARQIVETARSEA-SNYRSQYGSPVPLKYLNERVSMYMHAYTLY 484
I +GM +G+ D R +V+ +R A + Y+ Y P K L + ++ M T
Sbjct: 65 CAITPDIGMVYSGMGPDFRVLVDKSRKVAQTTYKKIYNEYPPTKILVQEIASVMQESTQS 124
Query: 485 SAVRPYGCSVVMGTWTDYEGPQMYMLDPSGVSFSYFGCAVGKAKQAAKTEIEKLKLGDLT 664
VRP+G S+++ D +GP +Y +DPSG F++ A+GK+ AAKT +EK +L
Sbjct: 125 GGVRPFGVSLLV-AGMDEKGPSLYQVDPSGTYFAWKATAIGKSSTAAKTFLEKRYNDELE 183
Query: 665 VKELV 679
+ + V
Sbjct: 184 LDDAV 188
>SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 112 bits (269), Expect = 5e-26
Identities = 59/174 (33%), Positives = 95/174 (54%), Gaps = 1/174 (0%)
Frame = +2
Query: 125 GYDLSASQFSPDGRVFQVEYAAKAVENSG-TVIGLRGKDGVVFAVEKLITSKLYEPGANK 301
G+D + + FSP+GR++QVEYA KA N+G T +G+ GK+ +K + KL + K
Sbjct: 6 GFDRTITVFSPEGRLYQVEYAFKAFNNAGITSVGVTGKNCACVISQKKVPDKLIDASTVK 65
Query: 302 RIFHIDEHVGMAVAGLISDARQIVETARSEASNYRSQYGSPVPLKYLNERVSMYMHAYTL 481
+F I + +G + G I+DAR V ARSEA+ + + G P+P L +R++ T
Sbjct: 66 HVFPITKGIGCVMTGSIADARAQVSRARSEAAEFEYKNGYPMPCDVLAKRMANIAQVSTQ 125
Query: 482 YSAVRPYGCSVVMGTWTDYEGPQMYMLDPSGVSFSYFGCAVGKAKQAAKTEIEK 643
+A+RP G ++ + D GP ++ LDP+G Y + G + +EK
Sbjct: 126 RAAMRPLGVAMTLVAVDDEIGPSLFKLDPAGFYIGYKATSAGPKQTETINWLEK 179
>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
Pre5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 104 bits (250), Expect = 1e-23
Identities = 58/173 (33%), Positives = 92/173 (53%), Gaps = 1/173 (0%)
Frame = +2
Query: 128 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYEPGANKRI 307
YD A+ +SP GR+ QVEYA +A++ +GL K V K +L K++
Sbjct: 6 YDGDATTWSPQGRLHQVEYALEAIKQGSATVGLVSKTHAVLVALKRNAEEL--SSYQKKL 63
Query: 308 FHIDEHVGMAVAGLISDARQIVETARSEASNYRSQYGSPVPLKYLNERVSMYMHAYTLYS 487
ID+H+G+A+AGL DAR + + EA + ++ + P+P++ L +V+ T
Sbjct: 64 IRIDDHIGIAIAGLAPDARVLSNYMKQEALSSKTLFTRPIPVRRLMSKVAEKAQINTQEY 123
Query: 488 AVRPYGCS-VVMGTWTDYEGPQMYMLDPSGVSFSYFGCAVGKAKQAAKTEIEK 643
RPYG +V+G D GP + PSG+ Y G ++G Q+A+T IE+
Sbjct: 124 GRRPYGVGFLVIG--YDESGPHLLEFQPSGLVLEYLGTSMGSRSQSARTYIER 174
>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
Raf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 27.5 bits (58), Expect = 1.9
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = -3
Query: 262 LLNSKYHSIFSSEANYCSRIFYSLCSIFHLENAT 161
LL +KY ++SS N C +++ ++F +T
Sbjct: 488 LLRNKYPKVYSSTPNLCDQVWLDRTNLFPCNRST 521
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 27.5 bits (58), Expect = 1.9
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +2
Query: 317 DEHVG-MAVAGLISDARQIVETARSEASNYRSQYGSPVPLKYLNERVSMYMHAYTLYSAV 493
D H+G + + + ++ V T+ + + +YG+PVP+K++ + MH+ A+
Sbjct: 393 DHHLGGINSITFLENGKRFVTTSDDSSMRFW-EYGTPVPIKFV---ADIAMHSMPRV-AL 447
Query: 494 RPYGCSV 514
RP G S+
Sbjct: 448 RPNGKSI 454
>SPAC17A5.08 |||COPII-coated vesicle component Erp2/3/4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 27.5 bits (58), Expect = 1.9
Identities = 15/53 (28%), Positives = 21/53 (39%)
Frame = +2
Query: 92 KQCVNMSSIGTGYDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVF 250
KQC + S TG + G F V+Y KA +G + + VF
Sbjct: 32 KQCYYLDSFHTGEKTHFTYAVQSGGSFDVDYMIKAPSQKTVALGKKRRQADVF 84
>SPAC4G8.06c |trm12||tRNA methyltransferase Trm12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 418
Score = 27.5 bits (58), Expect = 1.9
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +2
Query: 2 VINSNTAFRNINLYFGPTLV--YLSW*KSKYIKQCVNMSSIGTGYDLSASQFSPDGRVFQ 175
V N N +NI + GP LV Y + ++ ++K+CV + + DL R++
Sbjct: 18 VQNKNKFLKNIGIISGPKLVDTYSNQFEADFLKKCVLIPTSYNKEDL-PKDILDCPRIYL 76
Query: 176 VEYAAKAVE 202
+E K+V+
Sbjct: 77 IEEEVKSVQ 85
>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 515
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = -1
Query: 369 ICLASDMSPATAMPTCSSIWNI--LLFAPGSYNFDVINFSTANTTPSFPRR 223
I L++ + + P C +++ L + PGSY+ I+ N PR+
Sbjct: 455 IALSTKLYTGSIFPKCEKDFDLHFLAYKPGSYDLSSISIEDVNHVVHKPRK 505
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/44 (31%), Positives = 27/44 (61%)
Frame = +2
Query: 233 KDGVVFAVEKLITSKLYEPGANKRIFHIDEHVGMAVAGLISDAR 364
K G+V +V++ I + YE + +FHI E++ ++++ LI R
Sbjct: 207 KSGLVNSVDRCI--QFYEKSISLPMFHIAENLAISLSCLIISFR 248
>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 350
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = +2
Query: 80 SKYIKQCVNMSSIGTGYDLSASQFSPDGRVFQVEYAAKAVENSGTV 217
S ++ + + + +G G +S +G V + KAVENS +
Sbjct: 196 SSFVSRAASPAMVGPGVPFYSSITGANGNVLAPSGSLKAVENSDVI 241
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 25.8 bits (54), Expect = 5.8
Identities = 8/23 (34%), Positives = 16/23 (69%)
Frame = +1
Query: 601 SRKSQTGSKNRDRKAKTWRPHSE 669
S +TG+K R +K+ +W+P ++
Sbjct: 493 SNDEKTGNKKRKKKSVSWKPDND 515
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,917,728
Number of Sequences: 5004
Number of extensions: 63024
Number of successful extensions: 202
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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