Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1l13
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    29   0.42 
SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces...    29   0.55 
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    27   2.2  
SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1 |Schizosacch...    25   6.8  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    25   9.0  
SPBC354.02c |sec61||translocon alpha subunit Sec61|Schizosacchar...    25   9.0  

>SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 332

 Score = 29.5 bits (63), Expect = 0.42
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = +3

Query: 75  FYQAYLHIKRAQQKYNDTLDDRMDYIESVMRRRHYVPIEALPTIRFDTNLGTLAGDTIKC 254
           F+ A  + K   +K N+     +DY ES++ ++  V  E  P +    N   +  DT+K 
Sbjct: 5   FFSAQPYEKEPFEKVNENYKHEIDYHESILNKKTAVLAEKAPVVCVFVN-DKVDADTLKV 63

Query: 255 MS 260
           ++
Sbjct: 64  LA 65


>SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 29.1 bits (62), Expect = 0.55
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = -2

Query: 323 VIAYLTTIKHRQVNFTNKQRHRHAFNRVAGQRAEIGIKPDCGQRFNRHVVPS 168
           ++  LT ++H +V+   +++ R A  RV    +EIGI P      + H+VP+
Sbjct: 414 MVGALTAVEHLKVSNVEREQQRSAVRRVKQSLSEIGI-PVLSN--DTHIVPA 462


>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 403 QYPPTVSLWPLTTNTSVLLTKKYAADGLSHT*LQSNIG 290
           Q PP++S W      ++ L K+ AADG     ++ N G
Sbjct: 250 QIPPSISNWKNPKGYTIPLDKRLAADGRGLNDVEINDG 287


>SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 480 IAEDPRYYAGTDNMTQIAGRQHFDRIMPGQSN 575
           +  DP +Y  TD++ Q+   ++ D I    SN
Sbjct: 389 VLADPTFYNNTDHVEQLLSLEYADEIRNNISN 420


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1372

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 19/73 (26%), Positives = 33/73 (45%)
 Frame = -3

Query: 430  QLRGKLLVEQYPPTVSLWPLTTNTSVLLTKKYAADGLSHT*LQSNIGRSISLTNKGTDMH 251
            QL  K L  + P   +LW +      LLT K  A+G+          R ++++NK    +
Sbjct: 880  QLHWKRL--EVPFEKTLWNIVVADPYLLTLKLTAEGIFKQLEDCYPLREVTVSNKKVKEY 937

Query: 250  LIVSPANVPRLVS 212
                P ++ ++VS
Sbjct: 938  TGFMPVDLQQMVS 950


>SPBC354.02c |sec61||translocon alpha subunit
           Sec61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 479

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 289 RSISLTNKGTDMHLIVSPANVPRLVSNLIVGNASI 185
           R I   N+GT M L +SP     ++  L+VG+  I
Sbjct: 67  RMILAANRGTLMELGISPIVTSSMLVQLLVGSQLI 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,622,674
Number of Sequences: 5004
Number of extensions: 54142
Number of successful extensions: 130
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)