Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1l13
         (630 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0912 + 25896152-25896451,25896528-25897296,25897492-258976...    28   5.3  
03_05_1036 + 29875585-29875648,29875742-29875956                       28   5.3  
02_01_0412 - 3005600-3007759                                           28   5.3  
02_03_0104 + 15251177-15251516,15251630-15251883,15252001-152521...    28   7.0  
01_05_0451 - 22361617-22361811,22362728-22362842,22363443-223635...    27   9.3  

>06_03_0912 + 25896152-25896451,25896528-25897296,25897492-25897658,
            25898932-25901013,25901155-25901730,25904503-25905648,
            25907056-25908693
          Length = 2225

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 114  KYNDTLDDRMDYIESVMRRRHYVPIEALPTIR 209
            K NDTL D +  + S +   +Y+PI  LP ++
Sbjct: 935  KINDTLPDLVKLVFSDINGCNYIPISQLPNLK 966


>03_05_1036 + 29875585-29875648,29875742-29875956
          Length = 92

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 181 CRLKRCPQSGLIPISARWPATRLNACRCLC 270
           C   RC Q G I     +P  +L+ C CLC
Sbjct: 40  CSTVRCIQGGYITCK-NYPGKKLDGCVCLC 68


>02_01_0412 - 3005600-3007759
          Length = 719

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
 Frame = -3

Query: 460 LIKMTLVSRLQLRGKLLVEQYPPTVSLWPLTTNTSVLLTKKY-AADGLSHT*LQSNIGRS 284
           L ++T +SRL L   LL +  P  +    ++T++ V+L   +   DG  H    S+  R 
Sbjct: 100 LSELTSLSRLNLSYNLLSDGLPSEL----ISTSSIVVLDVSFNRLDGELHELNSSSPDRP 155

Query: 283 ISLTNKGTDMHLIVSPANVPRLVSNLIVGNAS 188
           + + N  +++     P+     +SNL   NAS
Sbjct: 156 LQVLNISSNLFTGAFPSTTWEKMSNLFAINAS 187


>02_03_0104 +
           15251177-15251516,15251630-15251883,15252001-15252129,
           15252578-15252985
          Length = 376

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
 Frame = -2

Query: 431 TIAGQTISGAVSAHXQFVAVDHKHVRVVDKEIRRRRVIA----YLTTIKHRQVNF---TN 273
           T+    +    +   +   VDH+   V D E+R+++++     +   +K RQ  F   + 
Sbjct: 250 TVNAHIVMYVTAGQGRIQVVDHRGRTVFDGELRQQQILLIPQNFAVAVKARQEGFSWVSF 309

Query: 272 KQRHRHAFNRVAGQRAEIGIKP 207
           K  H    +++AG+R+ +   P
Sbjct: 310 KTSHNAIDSQIAGKRSILRALP 331


>01_05_0451 -
           22361617-22361811,22362728-22362842,22363443-22363513,
           22363600-22363754,22363843-22363933,22364049-22364104,
           22364910-22365027,22365087-22365200,22365289-22365504
          Length = 376

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 15/62 (24%), Positives = 34/62 (54%)
 Frame = -2

Query: 356 RVVDKEIRRRRVIAYLTTIKHRQVNFTNKQRHRHAFNRVAGQRAEIGIKPDCGQRFNRHV 177
           R  +K   R R  +Y +  KH+++++  + +H++  ++++G      I PD G+ F  ++
Sbjct: 148 RAGEKVCSRCRKSSYCSK-KHQELHW--RAKHKNECHQISGSHNASAIMPDAGKVFAGNI 204

Query: 176 VP 171
            P
Sbjct: 205 WP 206


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,403,448
Number of Sequences: 37544
Number of extensions: 365888
Number of successful extensions: 813
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)