Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1l13
         (630 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    24   1.4  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   1.9  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    23   1.9  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    21   9.9  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    21   9.9  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/42 (21%), Positives = 22/42 (52%)
 Frame = -2

Query: 182 HVVPSTHYGFNVIHPIVQRVIVFLLGTFDM*VCLIKGLVYYI 57
           H++ +  Y +  ++P+   ++ F++G       +  G+V YI
Sbjct: 35  HLIDANWYQYPPLNPMWHGILGFVIGMLGFVSAMGNGMVVYI 76


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = +1

Query: 91  YISNVPNKNTMTRWTIGW 144
           ++++ PN + +T W +GW
Sbjct: 661 WLNHSPNYDQVTNWYMGW 678


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/42 (21%), Positives = 22/42 (52%)
 Frame = -2

Query: 182 HVVPSTHYGFNVIHPIVQRVIVFLLGTFDM*VCLIKGLVYYI 57
           H++ +  Y +  ++P+   ++ F++G       +  G+V YI
Sbjct: 1   HLIDANWYQYPPLNPMWHGILGFVIGMLGFVSVMGNGMVVYI 42


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = -3

Query: 265 GTDMHLIVSPANVPRLVSNLIVGNASIG 182
           G + + + S +  P LV+ +++G  S+G
Sbjct: 117 GDEENGLTSESTDPGLVAGIVIGVTSLG 144


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = -3

Query: 265 GTDMHLIVSPANVPRLVSNLIVGNASIG 182
           G + + + S +  P LV+ +++G  S+G
Sbjct: 88  GDEENGLTSESTDPGLVAGIVIGVTSLG 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,525
Number of Sequences: 438
Number of extensions: 3935
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)