Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1l02
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.24c |atg8||autophagy associated protein Atg8 |Schizosacc...   160   2e-40
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    27   3.4  
SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces ...    25   7.8  

>SPBP8B7.24c |atg8||autophagy associated protein Atg8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score =  160 bits (389), Expect = 2e-40
 Identities = 69/119 (57%), Positives = 92/119 (77%)
 Frame = +2

Query: 95  MKFQYKEEHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQF 274
           M+ Q+K++ SFEKRK E ++IR KYPDR+PVI EK  K+ +  +DKKKYLVPSDLTVGQF
Sbjct: 1   MRSQFKDDFSFEKRKTESQRIREKYPDRIPVICEKVDKSDIAAIDKKKYLVPSDLTVGQF 60

Query: 275 YFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYGN*F 451
            ++IRKRI L PE A+F F++ ++PPT+A M ++Y+EH  ED FLYI +S EN +G  F
Sbjct: 61  VYVIRKRIKLSPEKAIFIFIDEILPPTAALMSTIYEEHKSEDGFLYITYSGENTFGTVF 119


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +2

Query: 86  NINMKFQYKEEHSFEKRKAEGEKIRRKYPDRVPVIVEK 199
           NIN+   YK E    +R  E    ++KYP  +   + K
Sbjct: 154 NININESYKNETKSNQRLGEDVPSKKKYPHSMDAEISK 191


>SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 18/86 (20%), Positives = 40/86 (46%)
 Frame = +1

Query: 397 RFLSIHSIFRRKCLWKLIPNYSLSNSFTLSDHMVKFNLSLRLKLCIILWYFFIINWHIIL 576
           RF SI S+      + +  NY L N F+ +    + ++ +   +  I W   +IN+ +I+
Sbjct: 58  RFFSILSLVSCLAYFTMACNYGLKNVFSSASFFREVSVRMVYYVRYIQW---LINFPLII 114

Query: 577 CLSSYE*YKTFQASKGLLCFHIFVLV 654
            +  +    +      ++C+ +F +V
Sbjct: 115 VMLHWTVGVSILEIAYVVCYVLFAIV 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,707,615
Number of Sequences: 5004
Number of extensions: 56804
Number of successful extensions: 148
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)