Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1k19
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    26   6.0  
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po...    26   6.0  

>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +3

Query: 297 FVDFISFNATDNDNSMIIDLCSDARIIVAKKLTPDETYHQRVSGF 431
           FV  +SFNAT++D S     C D + I      P +    R+ GF
Sbjct: 369 FVGNLSFNATEDDLSTAFGGCGDIQSI----RLPTDPQSGRLKGF 409


>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 427

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
 Frame = +3

Query: 294 NFVDFISFNATDNDNSMIIDLCSDARIIVA----KKLTPDETYHQRVSGFLDFQKRNWIP 461
           N +D ++  +TD+  S I+D C +  ++ A    K     E  H   S +L+    N   
Sbjct: 136 NLIDKVNERSTDDLTSSILDACDEEILVDARNQIKNWLSSELSHS-TSKYLNITTSNRFI 194

Query: 462 RPPIESDPKV 491
           R  I+S  K+
Sbjct: 195 RKAIQSLVKI 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,529,876
Number of Sequences: 5004
Number of extensions: 45753
Number of successful extensions: 144
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)