Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1k19
         (702 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1038 - 10687702-10687851,10688725-10688985,10690942-106910...    31   0.89 
04_04_1153 - 31294014-31294095,31294180-31294261,31294422-312948...    29   2.7  
11_06_0291 + 22008412-22012284                                         29   3.6  
02_05_0975 + 33227431-33227730,33228556-33228636,33228883-332296...    29   3.6  
02_05_0982 - 33303500-33304011,33304091-33304208,33304606-333047...    28   6.2  
08_02_0269 + 15087481-15087893,15087978-15088074,15089068-150891...    28   8.3  

>12_01_1038 -
           10687702-10687851,10688725-10688985,10690942-10691011,
           10691096-10691289
          Length = 224

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
 Frame = +3

Query: 396 PDET-YHQRVSGFLDFQKRNW-----IPRPPIESDPKVRNVLDR--ELEIKLYK*KKN 545
           PD + Y   VS F+D  +RNW         P+E D K R  + R  EL +K Y   KN
Sbjct: 116 PDSSSYESLVSDFMDAVERNWHETYDSDDDPVECDKKYREQIIRFAELTLKRYNKSKN 173


>04_04_1153 -
           31294014-31294095,31294180-31294261,31294422-31294857,
           31295124-31295312,31296190-31296360
          Length = 319

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 26/115 (22%), Positives = 45/115 (39%), Gaps = 3/115 (2%)
 Frame = +3

Query: 156 IIFMNVKRAFYKNFHITCDLSLETLTVLVYEKARLIVKEMKFEQPPNFVDFISFNATDND 335
           +I +N     Y+N H      L    +   E+  L ++E K E PP     I    T +D
Sbjct: 99  LIEINPSSEVYRNLHARLKTQLALAPIPESEEESLYLEEDKQELPPERNVNIEICITKSD 158

Query: 336 ---NSMIIDLCSDARIIVAKKLTPDETYHQRVSGFLDFQKRNWIPRPPIESDPKV 491
                MI+       +IV  K   +    ++ +  L  +K++    P +E  P +
Sbjct: 159 KPATEMILKKKPTTELIVENKPATELILEKKPATELILEKKHATEPPKVEVPPSL 213


>11_06_0291 + 22008412-22012284
          Length = 1290

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
 Frame = +3

Query: 243 YEKARLIVKEMKFEQPPNFVDFISFN--ATDNDNSMIIDLCSDARIIVAKKLTPDETYHQ 416
           Y  A+L+  E   E PP+ ++ +S    A D DN  ++DL  D  ++      P   YH+
Sbjct: 183 YVNAKLL--EWAEEIPPDAIETLSIAIVAPDTDNKEVLDLARDTLVV------PGNYYHR 234

Query: 417 RVSGFLDFQKRNWIPRPPIE 476
            ++  +     +++P  P E
Sbjct: 235 SITVNVPAVHADFLPLRPKE 254


>02_05_0975 + 33227431-33227730,33228556-33228636,33228883-33229680,
            33230829-33231005,33231159-33231274,33231422-33231520,
            33231598-33232040,33232147-33232184,33232343-33232600,
            33233378-33233525,33233989-33234108,33234884-33234984,
            33235090-33235213,33235386-33235498,33236103-33236214,
            33236298-33236432,33236527-33236593,33236685-33236741,
            33236774-33236900,33237221-33237338,33237418-33237929
          Length = 1347

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 543  N*FINSCNNYLRPHLRWCHNAVVCLCVVLIVYAASTPLC 659
            N   ++C +YL   L+ C   V+CL +V  +Y+ +   C
Sbjct: 991  NRLTDACGSYLFTILQKCKECVLCLHIVTALYSLNVEQC 1029


>02_05_0982 - 33303500-33304011,33304091-33304208,33304606-33304726,
            33304811-33304877,33304968-33305102,33305186-33305297,
            33305852-33306009,33306177-33306300,33306406-33306542,
            33307284-33307403,33307878-33308025,33308674-33308931,
            33309090-33309127,33309232-33309674,33309761-33309845,
            33310063-33310123,33310277-33310453,33311611-33312408,
            33314394-33314693
          Length = 1303

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 543  N*FINSCNNYLRPHLRWCHNAVVCLCVVLIVYAASTPLC 659
            N   ++C +YL   L+ C   V CL +V  +Y+ +   C
Sbjct: 968  NRLTDACGSYLFTVLQKCKECVFCLHIVTALYSLNVEQC 1006


>08_02_0269 +
           15087481-15087893,15087978-15088074,15089068-15089112,
           15089281-15089492,15090809-15090911,15091002-15091097,
           15091405-15091473,15093341-15093588,15093640-15093759,
           15093847-15094284,15094503-15094620,15095262-15095303,
           15097099-15097161,15097365-15097475,15097730-15097801,
           15097875-15097993,15099682-15099745,15100238-15101860
          Length = 1350

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 318 NATDNDNSMIIDLCSDARIIVAKKLTPDETYHQRV 422
           NATD+D  MI  +C D   +++ +     ++H RV
Sbjct: 235 NATDDDTDMICAICDDGGKLLSCEGPCKRSFHARV 269


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,248,408
Number of Sequences: 37544
Number of extensions: 255639
Number of successful extensions: 670
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)