Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc1k15
(702 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 255 5e-69
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 154 1e-38
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 153 2e-38
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 134 9e-33
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 131 8e-32
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 125 5e-30
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 117 1e-27
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 105 8e-24
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 57 3e-09
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom... 29 0.49
SPBC30D10.03c |||IMP 5'-nucleotidase |Schizosaccharomyces pombe|... 28 1.1
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom... 26 4.5
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy... 25 7.9
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 255 bits (624), Expect = 5e-69
Identities = 121/187 (64%), Positives = 151/187 (80%)
Frame = +3
Query: 141 DEYGRPFIILRDQDRQKRLTGTDAIKSHIQAARQIASTLRTSLGPRGLDKLMVSSDGDVT 320
D+ G PFI++RDQ++++RL G DA+KSHI A + +A+ +RTSLGPRGLDK+++S DG++T
Sbjct: 12 DDQGNPFILVRDQEKKRRLHGIDAVKSHILATKTVANIVRTSLGPRGLDKILISPDGEIT 71
Query: 321 VTNDGATILKMMDVEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASNLLDKGIH 500
VTNDGATIL M+VEHQI KLLVQL++SQDDEIGDGTTGVVVLAGALLEQA L+DKGIH
Sbjct: 72 VTNDGATILDQMEVEHQIAKLLVQLSKSQDDEIGDGTTGVVVLAGALLEQAEALIDKGIH 131
Query: 501 PIRIADGYEMAAALALTHLDSVSEAFPVNKNTRENLIKVAMTTLGSKVVVKCHRLMAEIA 680
PIRIADGYE A +A+ HLD++S+ + NL + A T+LGSKVV K H A IA
Sbjct: 132 PIRIADGYEKACQVAVKHLDAISDVVDFSPENTTNLFRSAKTSLGSKVVSKAHDHFANIA 191
Query: 681 VDAVLAV 701
VDAVL+V
Sbjct: 192 VDAVLSV 198
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 154 bits (373), Expect = 1e-38
Identities = 84/176 (47%), Positives = 117/176 (66%), Gaps = 1/176 (0%)
Frame = +3
Query: 177 QDRQKRLTGTDAIKSHIQAARQIASTLRTSLGPRGLDKLMVSSDGDVTVTNDGATILKMM 356
QDR+K + S+I AAR +A +RTSLGP+G+DK++ + G+V +TNDGATILK +
Sbjct: 12 QDREKP---QEVRLSNIMAARSVADAIRTSLGPKGMDKMIQTGKGEVILTNDGATILKHL 68
Query: 357 DVEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASNLLDKGIHPIRIADGYEMAA 536
V H K+LV L+ +QD E GDGTT VV+LAG++L A LL KGIHP IA+ ++ AA
Sbjct: 69 SVLHPAAKMLVDLSAAQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHPTVIAESFQRAA 128
Query: 537 ALALTHLDSVSE-AFPVNKNTRENLIKVAMTTLGSKVVVKCHRLMAEIAVDAVLAV 701
+D + E A + + RE+L++ A T+L SK+V + L+A IAVDAVL V
Sbjct: 129 GFT---VDCMKENALAIELSDRESLLRAATTSLNSKIVSQYSNLLAPIAVDAVLKV 181
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 153 bits (371), Expect = 2e-38
Identities = 77/171 (45%), Positives = 113/171 (66%)
Frame = +3
Query: 189 KRLTGTDAIKSHIQAARQIASTLRTSLGPRGLDKLMVSSDGDVTVTNDGATILKMMDVEH 368
++++G D ++ A IA+ +++SLGP GLDK++V GDVTVTNDGATIL ++DVEH
Sbjct: 15 EKISGEDVRNQNVLATTAIANVVKSSLGPVGLDKMLVDDIGDVTVTNDGATILSLLDVEH 74
Query: 369 QIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASNLLDKGIHPIRIADGYEMAAALAL 548
GK+LV+LAQ QD E+GDGTT VV++A LL +A+ L+ IHP I GY +A A+
Sbjct: 75 PAGKVLVELAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGYRLAIREAV 134
Query: 549 THLDSVSEAFPVNKNTRENLIKVAMTTLGSKVVVKCHRLMAEIAVDAVLAV 701
+ V V+ +E+LI VA T++ SK++ + +AVDA+L+V
Sbjct: 135 KFMTDVLSC-SVDSLGKESLINVAKTSMSSKIIGNDSDFFSTMAVDAMLSV 184
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 134 bits (325), Expect = 9e-33
Identities = 67/170 (39%), Positives = 108/170 (63%)
Frame = +3
Query: 192 RLTGTDAIKSHIQAARQIASTLRTSLGPRGLDKLMVSSDGDVTVTNDGATILKMMDVEHQ 371
R G A S+IQAA+ +A +RT LGPR + K+++ G V +TNDG IL+ ++V H
Sbjct: 14 RQVGHKAQMSNIQAAKAVADVIRTCLGPRAMLKMLLDPVGSVLLTNDGHAILREIEVAHP 73
Query: 372 IGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASNLLDKGIHPIRIADGYEMAAALALT 551
K +++LA++QD+E+GDGTT V++LAG +L AS LLD+ IHP+ + ++ A AL+
Sbjct: 74 AAKSMIELARTQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPVVMIRSFKQALEDALS 133
Query: 552 HLDSVSEAFPVNKNTRENLIKVAMTTLGSKVVVKCHRLMAEIAVDAVLAV 701
+D ++ PVN + + ++ T +G+K+V + LM +A+ AV V
Sbjct: 134 IIDEIT--LPVNVDDNAEMFRLIRTCIGTKLVARWSDLMCHLALRAVRTV 181
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 131 bits (317), Expect = 8e-32
Identities = 70/184 (38%), Positives = 107/184 (58%), Gaps = 2/184 (1%)
Frame = +3
Query: 156 PFIILRDQDRQKRLTGTDAIKSHIQAARQIASTLRTSLGPRGLDKLMVSSDGDVTVTNDG 335
P I+L++ + G + S+I A + T+RT+LGP G DKLMV G+V ++NDG
Sbjct: 9 PVIVLKEGTDDSQ--GRGQLLSNINACVAVQDTIRTTLGPLGADKLMVDDRGEVVISNDG 66
Query: 336 ATILKMMDVEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASNLLDKGIHPIRIA 515
ATI+K++D+ H K LV +A++QD E+GDGTT VVV AG LL +A ++ G+ I
Sbjct: 67 ATIMKLLDIVHPAAKTLVDIARAQDAEVGDGTTSVVVFAGELLREARTFVEDGVSSHLII 126
Query: 516 DGYEMAAALALTHLDSVSEAFPVNK--NTRENLIKVAMTTLGSKVVVKCHRLMAEIAVDA 689
GY AA LA+ + ++ ++ R+ L K A T + SK++ ++ VDA
Sbjct: 127 RGYRKAAQLAVNKIKEIAIHLDLSDEGKLRDLLTKCASTAMNSKLIRSNSTFFTKMVVDA 186
Query: 690 VLAV 701
VL +
Sbjct: 187 VLTL 190
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 125 bits (302), Expect = 5e-30
Identities = 74/183 (40%), Positives = 110/183 (60%), Gaps = 3/183 (1%)
Frame = +3
Query: 156 PFIILRDQDRQKRLTGTDAIKSHIQAARQIASTLRTSLGPRGLDKLMVS-SDGDVTVTND 332
P I + Q+R G +A S A + ++++LGP+G+DK++ S S GD+ VTND
Sbjct: 5 PHQIFNESGIQER--GENARLSSFVGAIAVGDLVKSTLGPKGMDKILQSNSSGDIVVTND 62
Query: 333 GATILKMMDVEHQIGKLLVQLAQSQDDEIGDGTTGVVVLAGALLEQASNLLDKGIHPIRI 512
GATILK + +++ K+LV +++ QDDE+GDGTT V V A LL QA +++ IHP I
Sbjct: 63 GATILKSIALDNAAAKVLVNISKVQDDEVGDGTTSVCVFAAELLRQAEIMVNAKIHPQVI 122
Query: 513 ADGYEMAAALALTHL--DSVSEAFPVNKNTRENLIKVAMTTLGSKVVVKCHRLMAEIAVD 686
DGY +A A+ L S+ + K R +L +A TTL SK++ + A++AVD
Sbjct: 123 IDGYRIATKTAIDALRASSIDNSSDPAK-FRSDLENIARTTLSSKILSQNKNHFAQLAVD 181
Query: 687 AVL 695
AVL
Sbjct: 182 AVL 184
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 117 bits (282), Expect = 1e-27
Identities = 62/164 (37%), Positives = 96/164 (58%)
Frame = +3
Query: 210 AIKSHIQAARQIASTLRTSLGPRGLDKLMVSSDGDVTVTNDGATILKMMDVEHQIGKLLV 389
A++ +I AA + L+++LGP G K++V G + +T DG +L M +++ +
Sbjct: 17 ALQVNISAAIGLQDVLKSNLGPTGTTKMLVDGAGAIKLTKDGKVLLTEMQIQNPTASCIA 76
Query: 390 QLAQSQDDEIGDGTTGVVVLAGALLEQASNLLDKGIHPIRIADGYEMAAALALTHLDSVS 569
+ A +QDD GDGTT V +L G LL+QA + +G+HP I+DG+ +A ALT LDS
Sbjct: 77 KAATAQDDATGDGTTSVCLLVGELLKQAELYIREGLHPSLISDGFNLAKNEALTFLDSFK 136
Query: 570 EAFPVNKNTRENLIKVAMTTLGSKVVVKCHRLMAEIAVDAVLAV 701
F V+ RE L+ VA T+L +K+ K +A VDA+L +
Sbjct: 137 TDFEVD---REVLLNVAKTSLSTKISSKVVESLAPAVVDAILTI 177
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 105 bits (251), Expect = 8e-24
Identities = 56/165 (33%), Positives = 91/165 (55%)
Frame = +3
Query: 207 DAIKSHIQAARQIASTLRTSLGPRGLDKLMVSSDGDVTVTNDGATILKMMDVEHQIGKLL 386
DA+ + A R+++ RTSLGP G +K++V+ +TND ATI++ ++V H KL+
Sbjct: 26 DAVIRNCNAIRELSEITRTSLGPNGKNKIVVNHLQQTFLTNDAATIIRELEVIHPAAKLV 85
Query: 387 VQLAQSQDDEIGDGTTGVVVLAGALLEQASNLLDKGIHPIRIADGYEMAAALALTHLDSV 566
V Q Q++E+GD VVV G LL +A N++ G+ P+ IA GYEMA + + L+ +
Sbjct: 86 VDATQQQENELGDAANFVVVFTGELLAKAENMIRMGLTPLEIAKGYEMALSHTMEVLEEI 145
Query: 567 SEAFPVNKNTRENLIKVAMTTLGSKVVVKCHRLMAEIAVDAVLAV 701
+ + LIK T + SK ++++ A+L V
Sbjct: 146 CADKIETVESEKELIKAIRTCISSKQYGN-EDFLSDLVAKAILTV 189
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 56.8 bits (131), Expect = 3e-09
Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 7/147 (4%)
Frame = +3
Query: 201 GTDAIKSHIQAARQIASTLRTSLGPRGLDKLMVSSDGDVTVTNDGATI---LKMMDVEHQ 371
G DA S + +A + +LGP+G + L+ G +T DG T+ + + D
Sbjct: 40 GVDARASLLTGVDTLARAVSVTLGPKGRNVLIDQPFGSPKITKDGVTVARSVSLKDKFEN 99
Query: 372 IGKLLVQLAQSQDDEI-GDGTTGVVVLAGALLEQASNLLDKGIHPIRIADGYEMAAALAL 548
+G LVQ S+ +E+ GDGTT VL A+ + + G +P+ + G ++A
Sbjct: 100 LGARLVQDVASKTNEVAGDGTTTATVLTRAIFSETVRNVAAGCNPMDLRRGIQLA----- 154
Query: 549 THLDSVSEAFPVNK---NTRENLIKVA 620
+D+V E NK T E + +VA
Sbjct: 155 --VDNVVEFLQANKRDITTSEEISQVA 179
>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 564
Score = 29.5 bits (63), Expect = 0.49
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +1
Query: 376 VNYLCNWLRVKMTKLVMVPQGLLFLLVHSLSKPQICWTKVSI 501
+NYL WL V L+ V G+LF++ + S + + K+SI
Sbjct: 146 MNYLHRWLSVYAV-LISVLHGILFMIFSAQSYKPLLYDKISI 186
>SPBC30D10.03c |||IMP 5'-nucleotidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 405
Score = 28.3 bits (60), Expect = 1.1
Identities = 18/40 (45%), Positives = 23/40 (57%)
Frame = +3
Query: 267 LGPRGLDKLMVSSDGDVTVTNDGATILKMMDVEHQIGKLL 386
L GLD MVS DGDVT+ DG +L V ++ +LL
Sbjct: 136 LADNGLD--MVSFDGDVTLYEDGQPLLPDNPVISRLIQLL 173
>SPAC959.03c |||U3 snoRNP-associated protein
Utp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 520
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 260 AKSACNLSGCLYM*LYGIGTGKSFLSILIP 171
+ S +L C Y + GIG K F SI++P
Sbjct: 350 SSSVVDLHYCPYEDILGIGHAKGFESIIVP 379
>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 874
Score = 25.4 bits (53), Expect = 7.9
Identities = 21/76 (27%), Positives = 34/76 (44%)
Frame = +3
Query: 381 LLVQLAQSQDDEIGDGTTGVVVLAGALLEQASNLLDKGIHPIRIADGYEMAAALALTHLD 560
L++ A + I D V G + + + +L K I PI + L L H
Sbjct: 739 LVISDAMKLTNNIADALKNNKVNIGTI-KASLEVLVKCIAPI--IPCFSSECWLLLGHNS 795
Query: 561 SVSEAFPVNKNTRENL 608
SV +P++KN +EN+
Sbjct: 796 SVYSNWPISKNKKENM 811
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,915,953
Number of Sequences: 5004
Number of extensions: 60380
Number of successful extensions: 165
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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