Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1k11
         (724 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   326   1e-89
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    29   0.48 
U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AL110490-13|CAB54454.1|  377|Caenorhabditis elegans Hypothetical...    29   3.4  
AL110490-12|CAB54447.1|  326|Caenorhabditis elegans Hypothetical...    29   3.4  
AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta...    28   5.9  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  326 bits (800), Expect = 1e-89
 Identities = 151/226 (66%), Positives = 179/226 (79%)
 Frame = +2

Query: 47  RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 226
           RGPKKHLKRL AP  WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL   E  
Sbjct: 2   RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAK 61

Query: 227 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYK 406
           KI+ QR+++VDGKVRT   +P GFMDVV+IE+TNE FR++YD KGR+ +HRI   EA +K
Sbjct: 62  KILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFK 121

Query: 407 LCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCM 586
           LCKVK V T  K VP L T DGRTIRYPDP +KVND+I  +I+T KI D +KFE GNL  
Sbjct: 122 LCKVKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAY 181

Query: 587 ITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFII 724
           +TGGRN+GRVG I  RER PG+ DI+HIKDS GH+FATR++NVF+I
Sbjct: 182 VTGGRNVGRVGIIGHRERLPGASDIIHIKDSAGHSFATRISNVFVI 227


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 22/79 (27%), Positives = 29/79 (36%), Gaps = 1/79 (1%)
 Frame = +1

Query: 475 HHPLSRPTYQSQRFH-PVRHCNYEDYGLHQV*VGELVYDHGRP*LGACGHHRVPRETSRL 651
           HH  +   +  +  H P  H ++ ++G H    G     H  P      HH    E    
Sbjct: 462 HHAPAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGS----HHSP-----AHHGHHGEHHHA 512

Query: 652 LRHCAHQGLHGTHLRHEVE 708
             H  H G HGTH  H  E
Sbjct: 513 PAHHGHHGEHGTHHGHHGE 531



 Score = 27.5 bits (58), Expect(2) = 0.48
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = +1

Query: 589 HGRP*LGACGHHRVPRETSRLLRHCAHQGLHGTH 690
           HG    G+ G H     T   L H  H G HGTH
Sbjct: 643 HGDHHHGSHGVHHGHHGTHHSLAHHGHHGGHGTH 676



 Score = 23.0 bits (47), Expect(2) = 0.48
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = +1

Query: 664 AHQGLHGTHLRHEVEQRVHN 723
           AH G HG H  H      H+
Sbjct: 684 AHHGHHGAHHEHGAHHGAHH 703


>U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical
           protein C48B6.4 protein.
          Length = 623

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = +2

Query: 359 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 490
           G+  + R+T  E  Y+ CK+++ A   K VP     Y+V H  R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351


>AL110490-13|CAB54454.1|  377|Caenorhabditis elegans Hypothetical
           protein Y48B6A.13b protein.
          Length = 377

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +1

Query: 577 LVYDHGRP*LGACGHHRVPRETSRLLRH 660
           LV+D GR  +G+    R  RETS+LL+H
Sbjct: 207 LVFDDGRKKVGSSEGMRRSRETSQLLKH 234


>AL110490-12|CAB54447.1|  326|Caenorhabditis elegans Hypothetical
           protein Y48B6A.13a protein.
          Length = 326

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +1

Query: 577 LVYDHGRP*LGACGHHRVPRETSRLLRH 660
           LV+D GR  +G+    R  RETS+LL+H
Sbjct: 156 LVFDDGRKKVGSSEGMRRSRETSQLLKH 183


>AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta
            family protein 5 protein.
          Length = 938

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -2

Query: 516  ESLTLISGSG*RMVRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 352
            E  ++ +  G   V P C   Y     PVA  +  H  Y A + ++R   N P T
Sbjct: 868  EQASMYNAEG-EFVNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,209,094
Number of Sequences: 27780
Number of extensions: 407666
Number of successful extensions: 1215
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1209
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)