Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc1k07
(701 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 30 0.37
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.49
SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|... 28 1.1
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 27 2.0
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy... 27 3.4
SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces... 26 6.0
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 26 6.0
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ... 26 6.0
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce... 26 6.0
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p... 25 7.9
SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomy... 25 7.9
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom... 25 7.9
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 25 7.9
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 29.9 bits (64), Expect = 0.37
Identities = 16/69 (23%), Positives = 32/69 (46%)
Frame = +2
Query: 443 AFIHNRFHPLVTNFTNKMEFVVTETNDTSIPGEPILFTENEGVLLCSVDRPSIVKMLSRE 622
AF H F ++ + N +E N + P+L T+ L +D P ++++ +
Sbjct: 1380 AFDHQSFKDIIVHVAN-LELYYRALN-FYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKS 1437
Query: 623 FDTEALVNF 649
+T ++NF
Sbjct: 1438 ENTPLILNF 1446
>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 452
Score = 29.5 bits (63), Expect = 0.49
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 16/123 (13%)
Frame = -3
Query: 657 SFSKFTKASVSNSRLSILTIDGLSTEHNSTPSFSVNKMGSPGMLVSLVSVTTN--SILLV 484
S S +++SV + I + GLS ++ + + + +G+P +S VSVT N ++
Sbjct: 177 SSSSSSQSSVVSVNSEIFSYFGLSQQYVNYSTSRLCVVGTPRANMSTVSVTNNGSAVSNY 236
Query: 483 KLVTSGW---NLLCIKANVLN-------TTAAICRVSAL----FLNISNSGWVISRVLSI 346
+ T+GW N C+ V N T A + VS L N + S + ++ S
Sbjct: 237 TVNTNGWTSSNFKCVDDVVANIFGLDFYTAAVLSEVSILRSFALCNATTSSSLFRQIASY 296
Query: 345 AMY 337
+Y
Sbjct: 297 GVY 299
>SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 241
Score = 28.3 bits (60), Expect = 1.1
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = +2
Query: 386 IFRNKADTRQIAAVVFSTLAFIHNRFHPLV---TNFTNKMEFVVTETNDTS 529
IFR + R V AFI N++ PLV T++TN V +TN S
Sbjct: 93 IFRFNLNHRGYLEVKSGFRAFIENKYSPLVFHATSWTNGFSIDVQKTNPIS 143
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 27.5 bits (58), Expect = 2.0
Identities = 31/145 (21%), Positives = 65/145 (44%), Gaps = 5/145 (3%)
Frame = -3
Query: 657 SFSKFTKASVSNSRLSILTIDGLSTEHNSTPSFSVNKMGS--PGMLVSLVSVTTNSILLV 484
S S + +S S+S S+ S+ H+S+ S S + S P S ++ ++S +
Sbjct: 192 SSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFIS 251
Query: 483 KL-VTSGWNLLCIKANVLNTTAAICRVSALFLNIS--NSGWVISRVLSIAMYLLSANLIF 313
+ VT + + V ++TAA+ ++ N + N+G ++ V+ + + L
Sbjct: 252 TVTVTPSSSSSSTSSEVPSSTAALALNASKASNHTSLNAGAIVGIVIGCVAFAVVMALCI 311
Query: 312 RVS*LSKLLRFFKSNSANS*VFGSF 238
+ + + S+SAN + S+
Sbjct: 312 FLYFYFRRFKIRMSDSANEGKYPSY 336
>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 3.4
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -2
Query: 535 GNACVISFSDHKLHFVSKISNK 470
G+AC +S + K+H ++ ISN+
Sbjct: 230 GSACAVSDDEGKIHVINDISNE 251
>SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 374
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -1
Query: 242 LFIAVYNFGDRSNFVAFDTFHF-YTLIYNIC 153
L A+ F DRS VAF +F + L+Y IC
Sbjct: 125 LIKAMKQFKDRSENVAFTSFRYALFLVYYIC 155
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -2
Query: 538 SGNACVISFSDHKLHFVSKISNKW 467
SGN +S D+K++ + NKW
Sbjct: 266 SGNILAVSCGDNKVYLFKESQNKW 289
>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 377
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -2
Query: 499 LHFVSKISN-KWMESIVYKS*CAKHHGGNLPSVCFVSKYFQQRLGHFQGAEHSHVF 335
L +++ +S+ KW+E + K C K+ N S K F + +G+ A + +
Sbjct: 157 LQYITGVSDTKWLEFVSAKGQCPKYLYWNNKSYLLKKKRFLKEVGNSPSAVYCRYY 212
>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 993
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/43 (25%), Positives = 26/43 (60%)
Frame = -3
Query: 516 VSVTTNSILLVKLVTSGWNLLCIKANVLNTTAAICRVSALFLN 388
+S+ TNS L VKL ++ + C+ + + ++ ++ ++ L L+
Sbjct: 905 ISMQTNSSLSVKLNSNSNTITCVVSGTMVSSPSLANITILGLS 947
>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1040
Score = 25.4 bits (53), Expect = 7.9
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = -1
Query: 308 FHSFLNCLDFLNQIRPIRRFLDLFIAVYNFGDRSNF-VAFDTFHFYTLIYNICL*GV 141
F S ++CLDF Q + F + + F D S+ AF T + +L NI L GV
Sbjct: 504 FESEISCLDFSAQFQIGVGFWSKQVMILTFSDNSSISCAFQT-NVPSLPRNIILEGV 559
>SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 410
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -3
Query: 498 SILLVKLVTSGWNLLCIKANV 436
S +L L+ GW ++C ANV
Sbjct: 19 SCILAWLIEEGWEVICYMANV 39
>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 409
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/63 (25%), Positives = 26/63 (41%)
Frame = +2
Query: 377 LLEIFRNKADTRQIAAVVFSTLAFIHNRFHPLVTNFTNKMEFVVTETNDTSIPGEPILFT 556
+LEI D + ++VFST R++ LV ++ + E D IL
Sbjct: 292 ILEILTVHCDLEESFSIVFSTQPRFIARYNELVQAVSSSSNSEIDEVEDAETIDSKILEK 351
Query: 557 ENE 565
N+
Sbjct: 352 RND 354
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +3
Query: 156 NVVDKCIKMKRVKCNKVRTVTEIVNSDEKIQKPTNWPNLI 275
N++ ++++ ++C T+TEIVN K + N N++
Sbjct: 234 NLLYSFLQIEELRCAACETMTEIVNKKMKPLEKLNLLNIL 273
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,661,397
Number of Sequences: 5004
Number of extensions: 53593
Number of successful extensions: 177
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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