Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1k07
         (701 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78414-1|CAB01669.2|  472|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.      29   3.2  
U64843-1|AAF98232.1| 1067|Caenorhabditis elegans Hypothetical pr...    29   4.3  
U64833-11|AAB04822.2|  615|Caenorhabditis elegans Hypothetical p...    28   5.6  
U41033-5|AAA82377.1|  675|Caenorhabditis elegans Hypothetical pr...    28   7.4  

>Z78414-1|CAB01669.2|  472|Caenorhabditis elegans Hypothetical
           protein W09D12.1 protein.
          Length = 472

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = -3

Query: 618 RLSILTIDGLSTEHNSTPSFSVNKMGSPGMLVSLVSVTTNSILLVK 481
           RL+I  I GLS+  +STPS  V++   P  L S+V++     L  +
Sbjct: 260 RLAIRKIYGLSSVDHSTPSSDVDRSKCPKHLDSVVAINDQEWLFFR 305


>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical protein
            R03E1.1 protein.
          Length = 1043

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 506  VTETNDTSIPGEPILFTENEGVLLCSVDRPSIVK 607
            +T   + SIPG  I+  +  GV+   ++RP +VK
Sbjct: 992  LTSNGNLSIPGHVIISADLNGVIKVMINRPRLVK 1025


>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
          Length = 1043

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 506  VTETNDTSIPGEPILFTENEGVLLCSVDRPSIVK 607
            +T   + SIPG  I+  +  GV+   ++RP +VK
Sbjct: 992  LTSNGNLSIPGHVIISADLNGVIKVMINRPRLVK 1025


>U64843-1|AAF98232.1| 1067|Caenorhabditis elegans Hypothetical
           protein K06C4.15 protein.
          Length = 1067

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 600 IDGLSTEHNSTPSFSVNKMGSPGML 526
           I  L T H STPS    ++ SPGM+
Sbjct: 142 ISDLRTPHGSTPSTGTPRLSSPGMV 166


>U64833-11|AAB04822.2|  615|Caenorhabditis elegans Hypothetical
           protein B0507.1 protein.
          Length = 615

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 534 PENPFCLQKTRGCCCAPSTD 593
           PEN FC + T G CC P  D
Sbjct: 166 PENGFC-ETTTGFCCVPGVD 184


>U41033-5|AAA82377.1|  675|Caenorhabditis elegans Hypothetical
           protein K09E3.1 protein.
          Length = 675

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 600 IDGLSTEHNSTPSFSVNKMGSPGML 526
           I  L T H STPS    ++ SPGM+
Sbjct: 222 ISDLRTLHGSTPSTGTPRLSSPGMV 246


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,724,650
Number of Sequences: 27780
Number of extensions: 298763
Number of successful extensions: 804
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)