Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1k05
         (555 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    28   0.80 
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo...    27   2.5  
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    27   2.5  
SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||M...    27   2.5  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    26   3.2  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    25   5.7  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    25   5.7  
SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    25   7.5  

>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1210

 Score = 28.3 bits (60), Expect = 0.80
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -1

Query: 381  VIFKKKRFIYLELRLPRRASESNSKAWIFSVGF-RSLEDPEQCHRSIWIE 235
            ++F+ KRFI     +       ++K ++ S GF +S+ED     +  WI+
Sbjct: 998  ILFRLKRFIMSSEEINLDIPNLSTKQFVLSSGFKKSIEDSYTMKKRFWIK 1047


>SPBC8D2.05c |sfi1||spindle pole body protein
           Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 840

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 413 ESYGYYKTIDLLFLKKND 360
           E Y YYK ID ++L+K D
Sbjct: 178 EKYRYYKKIDAVYLRKAD 195


>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 451 TKNIKNMSCLCITNAVNATIV 513
           T  +KN+ C CITN V+  I+
Sbjct: 664 TNYLKNLLCCCITNLVSLAIL 684


>SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 407

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = +3

Query: 60  LFTIMSKPNV---LTRILDAIAETNTKVDSVQTQLNGLEESFQPLDGLPAQLTDFNT 221
           LF I++K N+          I   + K   + +Q   L E +QP   +PAQLT ++T
Sbjct: 61  LFQILTKTNLGNPANYPFATIDPVHAKAPVLDSQYELLCEIYQPKTRIPAQLTIYDT 117


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 381 VIFKKKRFIYLELRLPRRASESNS 310
           +IFKKK  +  E R P+R S ++S
Sbjct: 837 IIFKKKSMVKKEKRKPKRGSATHS 860


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -2

Query: 374 LKKNDLFTWNCVYHDERLNRIQKLGFSA*ALGV 276
           L+   LFTW C  + E  N +      A +LG+
Sbjct: 523 LEVQHLFTWTCELYSENFNTVISSFIIANSLGI 555


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 117 ETNTKVDSVQTQLNGLEESFQPLDGLPAQLTDFNTKISEIQSIL 248
           E N ++ S   Q + + ESF     L    T+++  +S +QSIL
Sbjct: 371 ENNIQISSEYLQQHLIGESFDGNISLEPNSTEWDDDVSALQSIL 414


>SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 594

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 383 LLFLKKNDLFTWNCVYHDERLNRIQKLGFSA 291
           L+FL  N  +T     HD   NRIQ   F+A
Sbjct: 467 LIFLLNNRGYTIEIQIHDGPYNRIQNWDFAA 497


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,030,754
Number of Sequences: 5004
Number of extensions: 37798
Number of successful extensions: 100
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)