Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1k04
         (721 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC132798-1|AAI32799.1|  263|Homo sapiens ret finger protein-like...    33   1.0  
BC132796-1|AAI32797.1|  263|Homo sapiens ret finger protein-like...    33   1.0  
AK122906-1|BAC85513.1|  263|Homo sapiens 22D).  protein.               33   1.0  

>BC132798-1|AAI32799.1|  263|Homo sapiens ret finger protein-like 4B
           protein.
          Length = 263

 Score = 33.1 bits (72), Expect = 1.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 334 SIDCNHAVCFKCYVRIIMDNSTYKCFC 254
           S+ C H  CF C  R I++N  ++  C
Sbjct: 23  SLSCTHVFCFDCIQRYILENHDFRAMC 49


>BC132796-1|AAI32797.1|  263|Homo sapiens ret finger protein-like 4B
           protein.
          Length = 263

 Score = 33.1 bits (72), Expect = 1.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 334 SIDCNHAVCFKCYVRIIMDNSTYKCFC 254
           S+ C H  CF C  R I++N  ++  C
Sbjct: 23  SLSCTHVFCFDCIQRYILENHDFRAMC 49


>AK122906-1|BAC85513.1|  263|Homo sapiens 22D).  protein.
          Length = 263

 Score = 33.1 bits (72), Expect = 1.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 334 SIDCNHAVCFKCYVRIIMDNSTYKCFC 254
           S+ C H  CF C  R I++N  ++  C
Sbjct: 23  SLSCTHVFCFDCIQRYILENHDFRAMC 49


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,203,144
Number of Sequences: 237096
Number of extensions: 1525441
Number of successful extensions: 5503
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5500
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8455186714
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)