Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc1k04
(721 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41026-1|AAM51522.2| 101|Caenorhabditis elegans Hypothetical pr... 40 0.002
AL032651-2|CAB60579.1| 272|Caenorhabditis elegans Hypothetical ... 35 0.051
AF016677-4|AAL11109.2| 304|Caenorhabditis elegans Hypothetical ... 33 0.27
AF016677-7|AAB66144.1| 292|Caenorhabditis elegans Hypothetical ... 29 3.3
Z99278-7|CAB16488.1| 382|Caenorhabditis elegans Hypothetical pr... 29 4.4
AL132948-9|CAC51067.1| 256|Caenorhabditis elegans Hypothetical ... 28 5.8
AF024499-3|AAB70357.1| 374|Caenorhabditis elegans Hypothetical ... 28 5.8
U80442-5|AAB37668.2| 794|Caenorhabditis elegans Hypothetical pr... 28 7.7
AF225921-1|AAF36687.1| 335|Caenorhabditis elegans secretory car... 28 7.7
AF003739-8|AAK84628.1| 335|Caenorhabditis elegans Scamp (synapt... 28 7.7
>U41026-1|AAM51522.2| 101|Caenorhabditis elegans Hypothetical
protein C28G1.5 protein.
Length = 101
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = -1
Query: 394 CNICFTTLKDTKNVDSSFVT-SIDCNHAVCFKCYVRIIMDNSTYKC-FC 254
C ICF DT DS + ++ C HA+C KC + +++NST +C FC
Sbjct: 6 CKICFDRFSDT---DSEHIPRNLTCGHALCHKC-ITAMVNNSTVECPFC 50
>AL032651-2|CAB60579.1| 272|Caenorhabditis elegans Hypothetical
protein Y6D1A.2 protein.
Length = 272
Score = 35.1 bits (77), Expect = 0.051
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = -1
Query: 394 CNICFTTLKDTKNVDSSFVTSIDCNHAVCFKCYVRIIMDNSTYKC 260
C IC +DTK +DC H +C +C RI +KC
Sbjct: 183 CEICSREYEDTKE---RVPRVLDCGHTICHECITRIHKPTEPFKC 224
>AF016677-4|AAL11109.2| 304|Caenorhabditis elegans Hypothetical
protein ZK1240.3 protein.
Length = 304
Score = 32.7 bits (71), Expect = 0.27
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Frame = -1
Query: 394 CNICFTTLKDTKNVDSSFVTSI-DCNHAVCFKCYVRIIMDNSTYKCFCSASSS--DFRVY 224
C IC K+ N+D + I C H++C C ++I ++ Y FC ++ D +V
Sbjct: 6 CEIC---CKEYSNIDQNHSPKILKCGHSICQICAAKLITNSCIYCPFCRETTKIRDGKVE 62
Query: 223 NKHGYVEFMPLTLIRNRDSIKQ 158
N M I + KQ
Sbjct: 63 NLKKNFGLMKAIEIMKNSTTKQ 84
>AF016677-7|AAB66144.1| 292|Caenorhabditis elegans Hypothetical
protein ZK1240.8 protein.
Length = 292
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -1
Query: 394 CNICFTTLKDTKNVDSSFVTSI-DCNHAVCFKCYVRIIMDNSTYKC 260
C +C +D N+D S + C H++C C V++I NS C
Sbjct: 6 CEVCN---EDYSNLDESRAPRVLKCGHSICQNCAVKLI-SNSVILC 47
>Z99278-7|CAB16488.1| 382|Caenorhabditis elegans Hypothetical
protein Y53C12B.6 protein.
Length = 382
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = -1
Query: 322 NHAVCFKCYVRIIMDNSTYKC---FCSASSSDFRVYNKHGYVEFMPLTLIRNR 173
NH V FKC +RI + N + +C CS + S + K V P L++ +
Sbjct: 258 NHIVYFKCNIRITVKNPSGECPVNNCSPNGSTGLISRKARDVFEHPFLLLKQK 310
>AL132948-9|CAC51067.1| 256|Caenorhabditis elegans Hypothetical
protein Y39B6A.10 protein.
Length = 256
Score = 28.3 bits (60), Expect = 5.8
Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Frame = -1
Query: 373 LKDTKNVDSSFVTSIDCNHAVCFKCYVRIIM-DNSTYKCFCSASSSDFRVYNKHGYVEFM 197
LK T+N++ S + + A+C K V + + D + ++ F S R+ K
Sbjct: 115 LKITENLEKSIIDYL----ALCQKLPVLVTLRDVTEFQIFAQKSEVPLRIQYKK-----R 165
Query: 196 PLTLIRNRDSIKQHWRELLENNTVNNRII 110
L ++R +++KQ + ++L N+T +I
Sbjct: 166 KLKILRISENLKQFFTKMLGNSTSGTHLI 194
>AF024499-3|AAB70357.1| 374|Caenorhabditis elegans Hypothetical
protein F42G2.5 protein.
Length = 374
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = -1
Query: 394 CNICFTTLKDTKNVDSSFVTSIDCNHAVCFKCYVRIIMDNSTYKC-FC 254
C IC TL+ + VD+ + C H++C C + + N C FC
Sbjct: 134 CEIC--TLEFSSVVDNQIPRILQCGHSICQSCASK-LAKNCVILCPFC 178
>U80442-5|AAB37668.2| 794|Caenorhabditis elegans Hypothetical
protein T20F5.6 protein.
Length = 794
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/38 (26%), Positives = 17/38 (44%)
Frame = -1
Query: 397 SCNICFTTLKDTKNVDSSFVTSIDCNHAVCFKCYVRII 284
SC IC+ K + F C H +C +C +++
Sbjct: 115 SCGICYDPFNTGKRIPKVF----PCGHTICLQCIKKLL 148
>AF225921-1|AAF36687.1| 335|Caenorhabditis elegans secretory
carrier membrane protein protein.
Length = 335
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 670 SVDRASQQYQNSIASETAAQRALQ 599
S+D+A Q++ N + S+ QRA Q
Sbjct: 293 SIDKARQEFTNGVMSDAGVQRATQ 316
>AF003739-8|AAK84628.1| 335|Caenorhabditis elegans Scamp (synaptic
vesicle protein)homolog protein 1 protein.
Length = 335
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 670 SVDRASQQYQNSIASETAAQRALQ 599
S+D+A Q++ N + S+ QRA Q
Sbjct: 293 SIDKARQEFTNGVMSDAGVQRATQ 316
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,852,378
Number of Sequences: 27780
Number of extensions: 251654
Number of successful extensions: 765
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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