Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc1k02
(649 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25B8.01 |dap1|SPAC26H5.15|cytochrome P450 regulator Dap1|Sch... 97 2e-21
SPCC70.06 |||nuclear export factor|Schizosaccharomyces pombe|chr... 33 0.035
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 29 0.58
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po... 28 1.0
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 27 2.3
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 3.1
SPBC1A4.06c |||mitochondrial matrix protein import protein|Schiz... 27 3.1
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 26 4.1
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch... 26 4.1
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 5.4
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo... 25 7.1
SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr 2||... 25 7.1
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha... 25 7.1
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 25 9.4
SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyce... 25 9.4
>SPAC25B8.01 |dap1|SPAC26H5.15|cytochrome P450 regulator
Dap1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 166
Score = 97.1 bits (231), Expect = 2e-21
Identities = 57/145 (39%), Positives = 86/145 (59%), Gaps = 8/145 (5%)
Frame = +3
Query: 219 VFVST-FVILYKFYYKYKTHCSKVAPLK-KLPKLRKDMTAVELRQYDGTQEGGRVLMAVN 392
VF+ T F+ L ++ K S +A + K P+ R D T EL++Y+G++ V +A+
Sbjct: 7 VFIVTLFLYLLITRWRRKNEKSFIASEEPKQPEWR-DYTPAELKEYNGSKNS-LVFLAIK 64
Query: 393 GWIFDVTRGNRFYGPGGPYAVFGGRDATRGLATFSVT---APEKD---YDDLSDLNSMEM 554
G +++VT G++FYGP GPY+ F G DA+RGLA S P+ D DD SDLN E
Sbjct: 65 GTVYNVTMGSKFYGPQGPYSAFAGHDASRGLAKNSFDDEFIPDSDAEELDDCSDLNDEER 124
Query: 555 ESVREWEEQFRENYDLVGRLLRPGE 629
+++ +W+ F + Y VGRL+ P E
Sbjct: 125 QALNDWKAFFDQKYQAVGRLISPRE 149
>SPCC70.06 |||nuclear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 458
Score = 33.1 bits (72), Expect = 0.035
Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Frame = -2
Query: 489 WQVLLWHLFLQKQHMAHRDRRTDSL*SHRI-STHSQPSTLCHPPVSRRTAVVLLRSYLFA 313
++V+L L++ H RDR + S+ SQ S CH ++R + L + A
Sbjct: 142 FKVILDRYSLREAHAFVRDRTRAVRQDFSVQSSFSQDSVYCHELIARFHIISL---HELA 198
Query: 312 I*VVFSREQPLNNVSYTCSKIYTVSQMYSQKQNK*TVDKTVFLRSQKSHCVWLAHFQPLV 133
FSR+Q + +S + +YT+ Q+Y ++ +K HC A F+ +
Sbjct: 199 HTPNFSRQQEIEQLSKSMEILYTLGQLYD------------YMHLRKEHCTHEAEFRAYM 246
Query: 132 V 130
V
Sbjct: 247 V 247
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 29.1 bits (62), Expect = 0.58
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = -1
Query: 304 SFFKGATFEQCVLYL**NLYSITNV 230
+FF+ AT +QC+L +L+S+TN+
Sbjct: 15 NFFRNATLDQCLLLFYLSLFSLTNL 39
>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 28.3 bits (60), Expect = 1.0
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +3
Query: 177 ETLKTLFCQPFIYFVFVSTFVILYKFYYKYKTHCSKVAP-LKKLPKLRKDMTAVELRQYD 353
E L L F V T +L +FY + HC +AP +KL + D + V + + D
Sbjct: 355 EDLVVLVADNFDDIVMDETKDVLVEFYAPWCGHCKNLAPTYEKLAEEYSDDSNVVVAKID 414
Query: 354 GTQ 362
T+
Sbjct: 415 ATE 417
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +3
Query: 237 VILYKFYYKYKTHCSKVAPLKKLPKLRKDMTAVELRQYDGTQEG 368
V++ KFY + HC +AP + + + L + D T+EG
Sbjct: 41 VLMVKFYAPWCGHCKALAPEYESAADELEKDGISLVEVDCTEEG 84
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 27.1 bits (57), Expect = 2.3
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = -1
Query: 574 SHSLTDSISIELRSLKSS*SFSGAVTENVASPLVASLPPKTA-YGPPGP*NRFPLVTSN 401
SHS T + S S+ + AVT +PL+ S+ A PP + P TSN
Sbjct: 238 SHSFTSGTHPPIVSSNSAFTLPNAVTPAAQAPLIRSVSEYPANVSPPAQSLQLPKSTSN 296
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 513 KDYDDLSDLNSMEMESVREWEEQFRENYDLVGRLLRPGEE 632
KD+DD + LN ++ + E Q +D++ +L G E
Sbjct: 606 KDFDDFTPLNLLKCVNYSLMEFQKNSTFDMLEKLYEIGRE 645
>SPBC1A4.06c |||mitochondrial matrix protein import
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +3
Query: 126 DSPPEVENVQAKHSGFFET--LKTLFCQPFIYFV 221
++P +VEN+ +K FF L L+ +P ++F+
Sbjct: 242 ENPRKVENIVSKQIAFFRKLYLPLLYAEPGVHFI 275
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 26.2 bits (55), Expect = 4.1
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Frame = +3
Query: 441 GPYAVFGGRDATRGLATFS--VTAPEKDYDDLSDLNSMEMESVREWEEQFRENYDLVGRL 614
G Y GR RGL + + D + L M M + QFR Y+++ L
Sbjct: 679 GEYTQCSGRAGRRGLDVTGTVIILSRSELPDTASLRHMIMGPSSKLISQFRLTYNMILNL 738
Query: 615 LR 620
LR
Sbjct: 739 LR 740
>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -1
Query: 439 PGP*NRFPLVTSNIHPFTAINTLPPSCVPSYCRS 338
P P P+ + H T +NT P S V + CRS
Sbjct: 198 PSPIILKPVEQAVNHAITLVNTSPSSVVDALCRS 231
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.8 bits (54), Expect = 5.4
Identities = 31/103 (30%), Positives = 45/103 (43%), Gaps = 5/103 (4%)
Frame = -1
Query: 613 SRPTRS*FSLNCSSHSLTDSISIELRSLKSS*SFSGAVTENVASPLVASLPP---KTAYG 443
S P S LN SS +T S ++ + +S S + T +S ++ S P TA
Sbjct: 609 STPITSSSVLN-SSTPITSSTALNTSTPITSSSVLNSSTPITSSSVLNSSTPITSSTALN 667
Query: 442 PPGP*NRFPLVTSN--IHPFTAINTLPPSCVPSYCRSSTAVIS 320
P ++ S+ I TA+NT P S SSTA+ S
Sbjct: 668 TSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTAITS 710
Score = 25.0 bits (52), Expect = 9.4
Identities = 30/108 (27%), Positives = 44/108 (40%), Gaps = 4/108 (3%)
Frame = -1
Query: 613 SRPTRS*FSLNCSSHSLTDSISIELRSLKSS*SFSGAVTENVASPLVASLP--PKTAYGP 440
S P S LN S+ + S+ ++ SS + + + +S L +S P T
Sbjct: 993 STPITSSSVLNTSTPITSSSVLNSSTAITSSTALNTSTPITSSSVLNSSTPITSSTVVNT 1052
Query: 439 PGP*NRFPLVTSN--IHPFTAINTLPPSCVPSYCRSSTAVISFRNLGS 302
P +V S+ I TA+NT P S SST + S L S
Sbjct: 1053 STPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTVLNS 1100
Score = 25.0 bits (52), Expect = 9.4
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Frame = -1
Query: 577 SSHSLTDSISIELRS-LKSS*SFSGAVTENVASPLVAS--LPPKTAYGPPGP*NRFPLVT 407
SS +L S I S L SS + + N ++P+ +S L T N +T
Sbjct: 1586 SSTALNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTVLNSSTPIT 1645
Query: 406 SNIHPFTAINTLPPSCVPSYCRSSTAVIS 320
S+ TA+NT PP + SST + S
Sbjct: 1646 SS----TALNTSPPITSSTVVNSSTPITS 1670
>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
Length = 686
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +3
Query: 588 ENYDLVGRLLRPGEEPR 638
ENY GR+++ GE+PR
Sbjct: 505 ENYHKEGRVIKEGEQPR 521
>SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 322
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +3
Query: 210 IYFVFVSTFVILYKFYYKYKTHCSKVAPLKKLPKLR 317
IYF+ + + L Y+ T C + KK+P+L+
Sbjct: 210 IYFLHSPSIIALGAIYHTNPTICLQYIEAKKIPELQ 245
>SPAC57A10.02 |cdr2||GIN4 family protein kinase
Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -2
Query: 489 WQVLLWHLFLQKQHMAHRDRRTDSL 415
WQ+L + K H+ HRD + ++L
Sbjct: 115 WQILCGLEYCHKLHICHRDLKPENL 139
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -2
Query: 159 WLAHFQPLVVNPFYSR*KNVCAGTLSFCFYSILNL 55
W+ + P+++ FY + V AG SF S+L +
Sbjct: 239 WMNIWCPIILYEFYGNDRQVQAGMSSFLIPSLLGV 273
>SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 25.0 bits (52), Expect = 9.4
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +3
Query: 480 GLATFSVTAPEKDYDDLSDLNSMEMESVREWEEQFRENYDLVG 608
G A V E YDD D+++ E + ++++FR L G
Sbjct: 27 GKAAEIVDTHENFYDDQGDIDNPEELAELGYKQEFRRQLSLFG 69
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,816,690
Number of Sequences: 5004
Number of extensions: 60346
Number of successful extensions: 231
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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