Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc1k02
(649 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41552-4|AAD31555.1| 198|Caenorhabditis elegans Vema (mammalian... 111 5e-25
U41552-5|AAP82646.1| 183|Caenorhabditis elegans Vema (mammalian... 108 3e-24
AL024499-6|CAA19709.1| 326|Caenorhabditis elegans Hypothetical ... 56 2e-08
AF016451-8|AAB66004.2| 354|Caenorhabditis elegans Serpentine re... 32 0.40
L15188-9|AAM22024.1| 618|Caenorhabditis elegans Hypothetical pr... 31 0.53
AL132846-3|CAB60346.2| 1648|Caenorhabditis elegans Hypothetical ... 31 0.53
AF016451-7|AAB66003.2| 312|Caenorhabditis elegans Serpentine re... 31 0.70
Z92970-1|CAB07480.1| 488|Caenorhabditis elegans Hypothetical pr... 30 1.6
AB072567-1|BAB88817.1| 488|Caenorhabditis elegans ceERp57 protein. 30 1.6
Z75547-14|CAA99901.2| 461|Caenorhabditis elegans Hypothetical p... 28 6.6
U41542-8|AAN39682.1| 437|Caenorhabditis elegans Protein disulfi... 28 6.6
U41542-7|ABO16445.1| 371|Caenorhabditis elegans Protein disulfi... 28 6.6
U41542-6|AAK39152.1| 493|Caenorhabditis elegans Protein disulfi... 28 6.6
AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical ... 28 6.6
AC006749-1|AAV28322.1| 1372|Caenorhabditis elegans Hypothetical ... 27 8.7
>U41552-4|AAD31555.1| 198|Caenorhabditis elegans Vema (mammalian
ventral midlineantigen) related protein 1, isoform a
protein.
Length = 198
Score = 111 bits (266), Expect = 5e-25
Identities = 60/162 (37%), Positives = 86/162 (53%), Gaps = 1/162 (0%)
Frame = +3
Query: 162 HSGFFETLKTLFCQPFIYFVFVSTFVILYKFYYKYKTHCSKVAPLKKLPKL-RKDMTAVE 338
H FF + + + +Y V+ + FY+ ++ AP K+L L DMT E
Sbjct: 10 HKSFFTMDLSSWFEFTMYDAVFLVVVLGFFFYWLTRSEQPLPAPPKELAPLPMSDMTVEE 69
Query: 339 LRQYDGTQEGGRVLMAVNGWIFDVTRGNRFYGPGGPYAVFGGRDATRGLATFSVTAPEKD 518
LR+YDG + +L +NG I+DVTRG FYGPG Y G DATR L T A +
Sbjct: 70 LRKYDGVKNE-HILFGLNGTIYDVTRGKGFYGPGKAYGTLAGHDATRALGTMDQNAVSSE 128
Query: 519 YDDLSDLNSMEMESVREWEEQFRENYDLVGRLLRPGEEPRNY 644
+DD + +++ E E+ EWE QF+ Y VGRL++ E +Y
Sbjct: 129 WDDHTGISADEQETANEWETQFKFKYLTVGRLVKNSSEKADY 170
>U41552-5|AAP82646.1| 183|Caenorhabditis elegans Vema (mammalian
ventral midlineantigen) related protein 1, isoform b
protein.
Length = 183
Score = 108 bits (260), Expect = 3e-24
Identities = 56/137 (40%), Positives = 78/137 (56%), Gaps = 1/137 (0%)
Frame = +3
Query: 237 VILYKFYYKYKTHCSKVAPLKKLPKL-RKDMTAVELRQYDGTQEGGRVLMAVNGWIFDVT 413
V+ + FY+ ++ AP K+L L DMT ELR+YDG + +L +NG I+DVT
Sbjct: 20 VLGFFFYWLTRSEQPLPAPPKELAPLPMSDMTVEELRKYDGVKNE-HILFGLNGTIYDVT 78
Query: 414 RGNRFYGPGGPYAVFGGRDATRGLATFSVTAPEKDYDDLSDLNSMEMESVREWEEQFREN 593
RG FYGPG Y G DATR L T A ++DD + +++ E E+ EWE QF+
Sbjct: 79 RGKGFYGPGKAYGTLAGHDATRALGTMDQNAVSSEWDDHTGISADEQETANEWETQFKFK 138
Query: 594 YDLVGRLLRPGEEPRNY 644
Y VGRL++ E +Y
Sbjct: 139 YLTVGRLVKNSSEKADY 155
>AL024499-6|CAA19709.1| 326|Caenorhabditis elegans Hypothetical
protein H38K22.3 protein.
Length = 326
Score = 56.0 bits (129), Expect = 2e-08
Identities = 30/94 (31%), Positives = 47/94 (50%)
Frame = +3
Query: 327 TAVELRQYDGTQEGGRVLMAVNGWIFDVTRGNRFYGPGGPYAVFGGRDATRGLATFSVTA 506
T +L +DGT++ + +A+ G +++V +YGPG Y F GRDATR T
Sbjct: 102 TPEQLHFFDGTRDSKPIYLAILGRVYNVDGKKEYYGPGKSYHHFAGRDATRAFTTGDFQE 161
Query: 507 PEKDYDDLSDLNSMEMESVREWEEQFRENYDLVG 608
L+ E+ S+R+W + + Y LVG
Sbjct: 162 SGL-IATTHGLSHDELLSIRDWVSFYDKEYPLVG 194
>AF016451-8|AAB66004.2| 354|Caenorhabditis elegans Serpentine
receptor, class t protein65 protein.
Length = 354
Score = 31.9 bits (69), Expect = 0.40
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +3
Query: 147 NVQAKHSGFFETLKTLFCQPFIYFVFVSTFVILYKFYYKYKTHCSKVAPLK 299
+++ K +G F L+ + C P + F S +I+Y Y K K S + L+
Sbjct: 208 DMEVKFAGLFAELELVLCFPTLALSFCSYILIIYSIYKKRKLAQSSSSSLR 258
>L15188-9|AAM22024.1| 618|Caenorhabditis elegans Hypothetical
protein C14B9.2 protein.
Length = 618
Score = 31.5 bits (68), Expect = 0.53
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Frame = +3
Query: 177 ETLKTLFCQPFIYFVFVSTFVILYKFYYKYKTHCSKVAP--LKKLPKLRKDMTAVELRQY 350
E + TL + F F+ + ++L +FY + HC K+AP K KL+ + V+L +
Sbjct: 147 EEVVTLTTENFDDFIS-NNELVLVEFYAPWCGHCKKLAPEYEKAAQKLKAQGSKVKLGKV 205
Query: 351 DGTQEGG-RVLMAVNGW-IFDVTRGNRFYGPGGPYAVFG 461
D T E V+G+ + R R + GP G
Sbjct: 206 DATIEKDLGTKYGVSGYPTMKIIRNGRRFDYNGPREAAG 244
>AL132846-3|CAB60346.2| 1648|Caenorhabditis elegans Hypothetical
protein Y43D4A.5 protein.
Length = 1648
Score = 31.5 bits (68), Expect = 0.53
Identities = 27/92 (29%), Positives = 39/92 (42%)
Frame = -1
Query: 637 LGSSPGLRSRPTRS*FSLNCSSHSLTDSISIELRSLKSS*SFSGAVTENVASPLVASLPP 458
LGS PG ++RP + L +S ++DS S R + G + PL +LPP
Sbjct: 907 LGSPPGPQTRPIGTGQPLPPTS-VVSDSTSSLGRPAAPAFGI-GRAPPGFSEPLGPTLPP 964
Query: 457 KTAYGPPGP*NRFPLVTSNIHPFTAINTLPPS 362
A PG FP + + F + P S
Sbjct: 965 AAAPSKPGSHEPFPTLVEQVESFFSDGEEPES 996
>AF016451-7|AAB66003.2| 312|Caenorhabditis elegans Serpentine
receptor, class t protein64 protein.
Length = 312
Score = 31.1 bits (67), Expect = 0.70
Identities = 12/48 (25%), Positives = 26/48 (54%)
Frame = +3
Query: 120 KMDSPPEVENVQAKHSGFFETLKTLFCQPFIYFVFVSTFVILYKFYYK 263
++ P +++ K++ F +L+ + C P + F+S +I+Y Y K
Sbjct: 157 ELTGPNWAYDMKVKYADLFASLELVLCFPTLALSFISYILIIYSIYKK 204
>Z92970-1|CAB07480.1| 488|Caenorhabditis elegans Hypothetical
protein H06O01.1 protein.
Length = 488
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +3
Query: 237 VILYKFYYKYKTHCSKVAP--LKKLPKLRKDMTAVELRQYDGTQE 365
+ L KFY + HC K+AP + PKL + V L + D T E
Sbjct: 39 IALVKFYAPWCGHCKKIAPEYERAAPKLASNDPPVALVKVDCTTE 83
>AB072567-1|BAB88817.1| 488|Caenorhabditis elegans ceERp57 protein.
Length = 488
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +3
Query: 237 VILYKFYYKYKTHCSKVAP--LKKLPKLRKDMTAVELRQYDGTQE 365
+ L KFY + HC K+AP + PKL + V L + D T E
Sbjct: 39 IALVKFYAPWCGHCKKIAPEYERAAPKLASNDPPVALVKVDCTTE 83
>Z75547-14|CAA99901.2| 461|Caenorhabditis elegans Hypothetical
protein R11D1.7 protein.
Length = 461
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +3
Query: 138 EVENVQAKHSGFFETLKTLFCQPFIYFVFVSTFVILYKFYY 260
EV V + F K C P + FVF TF+++Y ++
Sbjct: 14 EVFTVLGALAASFLVEKRFLCAPRMIFVFQQTFMLIYIIFF 54
>U41542-8|AAN39682.1| 437|Caenorhabditis elegans Protein disulfide
isomerase protein2, isoform b protein.
Length = 437
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +3
Query: 240 ILYKFYYKYKTHCSKVAP--LKKLPKLRKDMTAVELRQYDGTQEG 368
IL +FY + HC +AP K +L+++ + ++L + D T G
Sbjct: 43 ILVEFYAPWCGHCKSLAPEYAKAATQLKEEGSDIKLGKLDATVHG 87
>U41542-7|ABO16445.1| 371|Caenorhabditis elegans Protein disulfide
isomerase protein2, isoform c protein.
Length = 371
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +3
Query: 240 ILYKFYYKYKTHCSKVAP--LKKLPKLRKDMTAVELRQYDGTQEG 368
IL +FY + HC +AP K +L+++ + ++L + D T G
Sbjct: 43 ILVEFYAPWCGHCKSLAPEYAKAATQLKEEGSDIKLGKLDATVHG 87
>U41542-6|AAK39152.1| 493|Caenorhabditis elegans Protein disulfide
isomerase protein2, isoform a protein.
Length = 493
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +3
Query: 240 ILYKFYYKYKTHCSKVAP--LKKLPKLRKDMTAVELRQYDGTQEG 368
IL +FY + HC +AP K +L+++ + ++L + D T G
Sbjct: 43 ILVEFYAPWCGHCKSLAPEYAKAATQLKEEGSDIKLGKLDATVHG 87
>AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical
protein M01E10.2 protein.
Length = 1286
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Frame = -1
Query: 484 SPLVASLPPKTAYGPPGP*NRF--PLVTSNIHPFT-AINTLPPSCV 356
S +V +LP K + P + F PLVTS+ +PFT ++T P S V
Sbjct: 502 STVVHNLPTKPSSAPTLHPSTFSPPLVTSSENPFTFTLDTTPTSTV 547
>AC006749-1|AAV28322.1| 1372|Caenorhabditis elegans Hypothetical
protein Y39D8B.1 protein.
Length = 1372
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +3
Query: 282 KVAPLKKLPKLRKDMTAVELRQYDGTQEGGRVLMAVNGWIFDVTRGNRFYGPGGPY 449
K + + + KL K M+A ++ + + T G +M+ + + FYGPG PY
Sbjct: 1267 KTSKIDSMEKLHKSMSAAQMHEMNST---GYAIMSSQ-------QISEFYGPGSPY 1312
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,908,084
Number of Sequences: 27780
Number of extensions: 355676
Number of successful extensions: 1109
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1106
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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